Hi Reece, No, we do not store NCBI alignment coordinates. You statement is correct ... see the "methods" section here for details: http://genome.ucsc.edu/cgi-bin/hgTrackUi?g=refGene
Please let us know if you have any additional questions: [email protected] - Greg Roe UCSC Genome Bioinformatics Group On 4/14/12 6:03 AM, Reece Hart wrote: > On Fri, Apr 13, 2012 at 5:43 PM, Brooke Rhead<[email protected]> wrote: >> It's possible to do something similar to get RefSeq Gene exon >> coordinates if you prefer >> > Hi Brooke- > > I'm interested in the last statement. My understanding from a previous > question on this list was that the exon coordinates in UCSC were derived > from BLAT alignment, which are not necessarily identical to the NCBI > coordinates derived by Splign alignment. Is this correct, or does UCSC > store the NCBI (Splign) alignment coordinates as well? > > Thanks, > Reece > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
