I'm looking at chr11 of GRCh37/hg19. Specifically chr11:1000000-1200000. When BAC end sequences are displayed, I see BAC clone RP11-631g2. I can click through it, and get a link to the end sequences: http://genome.ucsc.edu/cgi-bin/hgc?hgsid=276735669&c=chr11&o=952561&t=1128625&g=bacEndPairs&i=RP11-613G2
When I blast those I get hits on chromosome 11. So far, so good. Now to double check, I entered "RP11-631g2" in NCBI's Clone search engine. When I do this, I get directed to one BAC end sequence: http://www.ncbi.nlm.nih.gov/nucgss/4698107 When I blast that sequence, it locates to chr7. What's going on here? Am I doing something wrong? Should I expect NCBI and UCSC to agree on this? If so, who is likely to be wrong and how do I inform the correct person? If I order RP11-631g2 from BACPAC, what am I actually going to get? _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
