Hi Ed, At the coords you provided, chr11:1000000-1200000, there is RP11-613g2, but not RP11-631g2 (note the 613 vs. 631). I think you were simply typing in the wrong ID. To make it easy though, when you click through to the element's detail page, just click on the element's ID at the top (e.g., RP11-613g2) and you'll be taken to the correct NCBI page (E.g., http://www.ncbi.nlm.nih.gov/clone/172322/).
Please let us know if you have any additional questions: [email protected] - Greg Roe UCSC Genome Bioinformatics Group On 6/4/12 1:00 PM, Ed Siefker wrote: > I'm looking at chr11 of GRCh37/hg19. Specifically chr11:1000000-1200000. > When BAC end sequences are displayed, I see BAC clone RP11-631g2. > I can click through it, and get a link to the end sequences: > http://genome.ucsc.edu/cgi-bin/hgc?hgsid=276735669&c=chr11&o=952561&t=1128625&g=bacEndPairs&i=RP11-613G2 > > When I blast those I get hits on chromosome 11. So far, so good. > > Now to double check, I entered "RP11-631g2" in NCBI's Clone > search engine. When I do this, I get directed to one BAC end > sequence: > http://www.ncbi.nlm.nih.gov/nucgss/4698107 > > When I blast that sequence, it locates to chr7. > > > What's going on here? Am I doing something wrong? Should I expect > NCBI and UCSC to agree on this? If so, who is likely to be wrong > and how do I inform the correct person? If I order RP11-631g2 > from BACPAC, what am I actually going to get? > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
