Hello Zach, Thank you for taking the time to consult the archives. The file you downloaded is the data contained in the table referenced later in that same thread:
https://lists.soe.ucsc.edu/pipermail/genome/2011-September/027168.html The schema for that table describes the columns which contain the types of data you are looking for. Hopefully this information was helpful and answers your question. If you have further questions or require clarification feel free to contact the mailing list at [email protected]. Regards, Pauline Fujita UCSC Genome Bioinformatics Group http://genome.ucsc.edu On 6/13/12 10:55 AM, Zachary W. Carpenter wrote: > Hello, > I am emailing with a similar question to the one described below. I > downloaded the affyU133Plus2.txt.gz file described, but the file does not > contain headers and I do not know how to interpret it. I need a file with > unique probe id's, chromosome, their start position, length, end position > and strand orientation. If you could help me figure out how to get this > information out of the affyU133Plus2.txt.gz file I would greatly appreciate > it!! > > Best, > Zach > > > Hi Luvina- > > Thank you for your response. I believe this file shows the probeset > location, I am interested in the individual probe locations. Do you > have that? > > Casey > > -----Original Message----- > From: Luvina Guruvadoo [mailto:luvina at soe.ucsc.edu > <https://lists.soe.ucsc.edu/mailman/listinfo/genome>] > Sent: Wednesday, September 21, 2011 4:06 PM > To: Gates, Casey > Cc: genome at soe.ucsc.edu<https://lists.soe.ucsc.edu/mailman/listinfo/genome> > Subject: Re: [Genome] Probe Coordinates for the Affymetrix U133 2.0 plus array > > Hi Casey, > > You can download this table directly from our downloads server. From the > main page, click on 'Downloads' (located on left-side navigation menu). > On the following page, click on 'Human' then 'Annotation Database'. This > will take you here:http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/. > <http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/> The file > you > want to download is affyU133Plus2.txt.gz. > > Please contact us again at genome at soe.ucsc.edu > <https://lists.soe.ucsc.edu/mailman/listinfo/genome> if you have any > further > questions. > > > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
