Hi Arijita,
You can retrieve this information from the Table Browser (from main
page, click on "Tables" on the top blue navigation bar). After selecting
a clade, genome, and assembly of your choice, make the following selections:
group: Genes and Gene Prediction Tracks
track: choose a gene prediction track you would like to use (I'll use
'UCSC Genes' for this example)
table: the default table will be the primary table for that track
('knownGene' in this case)
region: genome
output format: sequence
output file: enter a file name to save your results to a file, or leave
blank to display results in the browser
Click 'get output'. On the following page, select 'genomic' then submit.
>From here, you may select the appropriate options and click 'get sequence'.
For more information on how to use the Table Browser, please refer to
our help pages:
http://genome.ucsc.edu/goldenPath/help/hgTablesHelp.html
Feel free to contact us again at [email protected] if you have any
further questions.
---
Luvina Guruvadoo
UCSC Genome Bioinformatics Group
On 6/14/2012 9:16 AM, arijita wrote:
>
> Hello,
> Can you please let me know how to download the entire list of
> Exons,Introns, 5'-UTR ,3'-UTR for human and mouse from UCSC? Hope you will
> reply soon.
>
> Best Regards
> Arijita Sarkar
>
>
> *************************************************************
> Arijita Sarkar
> Junior Research Fellow (JRF)
> Centre of Excellence in Bioinformatics (COE)
> Bose Institute
> **************************************************************
>
> _______________________________________________
> Genome maillist - [email protected]
> https://lists.soe.ucsc.edu/mailman/listinfo/genome
_______________________________________________
Genome maillist - [email protected]
https://lists.soe.ucsc.edu/mailman/listinfo/genome
