Dear Curators, I am trying to run BLAT locally on the command line. I have a query file which consists of DNA and a database file which has proteome. I am using dnax option because I want the query to be translated in 6 frames to protein and then align it to the database.
The command I am typing is: blat proteome.fa dna_query.fa -t=dnax -q=prot output.psl I am not sure about the results, kindly tell me whether this is the right way to execute the program . Thank you in advance, warm regards, Amit. _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
