Hi Zhu, There is currently a hardware problem on our end with the genome-mysql.cse.ucsc.edu server. We are hoping to get it fixed over the weekend, but it is not guaranteed. Thank you for your patience while we get this problem resolved.
If you have further questions, please contact us again at [email protected]. -- Brooke Rhead UCSC Genome Bioinformatics Group On 6/29/12 8:17 AM, Zhu Wang wrote: > > Hi, I recently re-installed my ubuntu 12.04 (64-bits) as well as > built up featureBits again as I did before. But this time the > featureBits gave out error message: > _________________________________________ Can't start query: describe > chr1_gap > > mySQL error 1030: Got error 28 from storage engine > _________________________________________ > > I googled the mySQL error and most said it is because the filesystem > does not have enough space. But this seems not to be my case. When I > run dh -f I got: _________________________________________ Filesystem > Size Used Avail Use% Mounted on /dev/loop0 29G 4.6G 23G > 17% / udev 3.9G 4.0K 3.9G 1% /dev tmpfs 1.6G > 860K 1.6G 1% /run none 5.0M 0 5.0M 0% /run/lock > none 3.9G 156K 3.9G 1% /run/shm /dev/sda2 281G > 87G 195G 31% /host ____________________________________________ > > I am not sure what is the problem. Do you have any thoughts? > > I build the program based on kent/src/product/README.building.source. > Since I just need featureBits to work I only go to the step 4 as > suggested. I also have the .hg.conf file under /home/ with three > lines: db.host=genome-mysql.cse.ucsc.edu db.user=genomep > db.password=password I am not sure whether this matters. > > Thank you very much. Zhu > > _______________________________________________ Genome maillist - > [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
