Hi Jiang, We have the conservation files in Multiple Alignment Format (MAF), which you can read more about here: http://genome.ucsc.edu/FAQ/FAQformat#format5. These MAF files are available from our download server here: http://hgdownload.cse.ucsc.edu/goldenPath/hg19/multiz46way/maf/
Please contact us again at [email protected] if you have any further questions. --- Luvina Guruvadoo UCSC Genome Bioinformatics Group On 6/28/2012 11:08 AM, zhengyu jiang wrote: > Dear UCSC bioinformatics- ers, > > I want to look at conservation of several genes across placental mamals. I > am tryiing to caculate omega value using SiPhy basd on > http://bioinformatics.oxfordjournals.org/content/25/12/i54 which requires > multple alignment file (MAP) or phylip. Is there a specific way to output > the specific files for several of the genes. > > Thanks, > Jiang > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
