Hi my name is Blake, I am a UCSC undergrad doing research.
I am looking to perform a fairly large batch query using BED format. I have somewhere in the range of 1000 queries to perform and I was wondering what are some more efficient ways to access your data? My current process takes approx 5 seconds for each query, and eventually caused a timeout before I canceled the query. Each query is currently sent indiviudually for each sequence. Is there a way to query many sequences at once? Thank you for your help. P.S> I am using Mac OS Lion, using Python urllib2. A BED.txt with about 1000 different sequence postions on one genome (hg18) and on many chromosomes. Each sequence approximately 50 bp. //B -- Blake Allen Blakedallen.com _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
