Hi Sudeep, This previously answered mailing list may be useful for you: https://lists.soe.ucsc.edu/pipermail/genome/2008-August/016891.html
I hope this information answers your question. Please contact us again at [email protected] if you have any further questions. --- Luvina Guruvadoo UCSC Genome Bioinformatics Group On 7/13/2012 8:49 AM, sudeep s wrote: > Hi list, > > I was looking at promoter sequences (1500bp) that I retrieved through UCSC > Table browser for Sus scrofa (build: Sscrofa9.2) for genes on the negative > strand. It looks like Table browser is treating genes on positive and > negative strand the same way and retrieving sequences upstream of the > transcription start site (as per the nucleotide co - ordinates in the fasta > headers), but for genes on the negative strand shouldn't it be sequences > downstream of the transcription stop site and then reverse the sequences ? > > Thank you in advance. > Sudeep. > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
