Hi list, I was looking at promoter sequences (1500bp) that I retrieved through UCSC Table browser for Sus scrofa (build: Sscrofa9.2) for genes on the negative strand. It looks like Table browser is treating genes on positive and negative strand the same way and retrieving sequences upstream of the transcription start site (as per the nucleotide co - ordinates in the fasta headers), but for genes on the negative strand shouldn't it be sequences downstream of the transcription stop site and then reverse the sequences ?
Thank you in advance. Sudeep. _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
