Good Afternoon Andre:
You need to export these variables to your shell environment.
Please note the discussion of MACHTYPE in step 1:
http://genome-source.cse.ucsc.edu/gitweb/?p=kent.git;a=blob;f=src/product/README.building.source
It depends upon what type of shell you are using. Perhaps 'export' for bash,
or 'setenv' for tcsh/csh
--Hiram
Andre Gatorano wrote:
> I have set MACHTYPE to both i386 and i686. I have added the $MACHTYPE
> directories to both ~/bin/ , ~/lib/ as well as /usr/local/bin ,
> /usr/local/lib. I have added these to the path as well.
>
> This is the error I get
>
> make[1]: *** No rule to make target `../lib//jkweb.a', needed by `blat'.
> Stop.
> make[1]: Leaving directory `/opt/galaxy-dist/data2/hg19/seq/blatSrc/blat'
> make: *** [all] Error 2
>
> What are possible fixes?
>
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