Hello Nejc, You can find the mappings you're looking for in the kg4ToKg5 table via the table browser (http://genome.ucsc.edu/cgi-bin/hgTables). It is a little tricky as this table doesn't show up within the shortlist of tables for the UCSC genes tracks. Within hg19 select:
group: All Tables database: hg19 table: kg4ToKg5 Or to directly download the whole table file you can grab it from our downloads server here: http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/ (scroll down to the "kg4ToKg5.*" files) If you have further questions or require clarification feel free to contact the mailing list at [email protected]. Regards, Pauline Fujita UCSC Genome Bioinformatics Group http://genome.ucsc.edu On 7/11/12 4:08 AM, Nejc Haberman wrote: > Hi, > I received a list of the genes which are from "hg18 genome" data. I > tried to convert those genes to the new IDs by using an "Old UCSC Genes" > track from table "kg3ToKg4" and "kg5Tokg6". I still have a problem that > some of the genes are still missing in the "hg19 genome" data. Is there > another table with changed IDs? I also couldn't find "kg4ToKg5" table? > Thank you for your help! > > regards, > Nejc Haberman > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
