Hi Indrani, I'm sorry, but we don't use the terms you mention in your email, other than "5'UTR". We suggest you contact Illumina; they may be able to provide more information on what they refer to as "body" and "TSS*".
Please contact us again at [email protected] if you have any further questions. --- Luvina Guruvadoo UCSC Genome Bioinformatics Group On 7/13/2012 10:23 AM, Datta, Indrani wrote: > Hello, > > I am interested to know more about the definitions of UCSC_RefGene_Group > annotation in Illumina 450k chip, > it says "body", "TSS200","TSS1500", 5'UTR etc, can you please help me find > any documents which describes > these terms like what is "body" actually means, is this entire gene from > ts-start to ts-end , > and how can I define promoter region from these above annotation, > does promoter region includes TSS200, TSS1500, 5'UTR, and 1st Exon etc. > > I talked with Illumina staff, they referred to look for these in UCSC genome > browser as their annotation came from UCSC, > can you please little bit explain. > > Thanks, > Indrani > > > ________________________________ > CONFIDENTIALITY NOTICE: This email contains information from the sender that > may be CONFIDENTIAL, LEGALLY PRIVILEGED, PROPRIETARY or otherwise protected > from disclosure. This email is intended for use only by the person or entity > to whom it is addressed. If you are not the intended recipient, any use, > disclosure, copying, distribution, printing, or any action taken in reliance > on the contents of this email, is strictly prohibited. If you received this > email in error, please contact the sending party by reply email, delete the > email from your computer system and shred any paper copies. > > Note to Patients: There are a number of risks you should consider before > using e-mail to communicate with us. See our Privacy Policy and Henry Ford My > Health at www.henryford.com for more detailed information. If you do not > believe that our policy gives you the privacy and security protection you > need, do not send e-mail or Internet communications to us. > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
