Hi Katharina, The error message is telling you that there is a genome coordinate in the BED file you supplied that is larger than the chromosome length. Make sure you're uploading the data to the mm10 assembly, as chromosome sizes will differ between assemblies. If you are still experiencing difficulties, please contact us again at [email protected].
--- Luvina Guruvadoo UCSC Genome Bioinformatics Group On 7/19/2012 3:47 AM, Heilmann, Katharina wrote: > HI > I'm having trouble uploading a bedGraph file to the genome browser, namely > producing this error message: > Error File 'kinetics-7a.bedGraph.gz' - Error line 2763904 of somefile.gz: > chromEnd larger than chrom chrUn_GL456381 size (25900> 25871) > Error File 'kinetics-81.bedGraph' - Error line 598338 of custom track: > chromEnd larger than chrom chrUn_GL456383 size (38700> 38659) > Similar errormessages occur using other files that were generated in the same > fashion. The data were aligned to mm10 as is my built that I try to upload > this to. Previously the upload of files that were generated in the same > fashion was possible. So have there been any recent changes that might cause > this? > Thanks for your help. > > > Katharina Heilmann (PhD student) > Deutsches Krebsforschungszentrum (DKFZ) - German Cancer Research Center > Division Epigenomics and Cancer Risk Factors (C010) Im Neuenheimer Feld 280, > 69120 Heidelberg, Germany > Tel.: 0049(0)6221/42-3330 > e-mail: [email protected]<mailto:[email protected]> > http://www.dkfz.de/en/tox/cancer_chemoprevention.html > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
