Dear UCSC browser team, we recently published a map of conserved microRNA target sites in long non-coding RNAs, based on the GENCODE annotation. The work is described in the following paper:
http://bioinformatics.oxfordjournals.org/content/28/15/2062.long Our target site map is not limited to lncRNAs, but covers the complete GENCODE transcriptome, both in typical (3' UTR) and atypical target regions. As such, it constitutes a "whole transcriptome" target site map, to facilitate studies of e.g. microRNA-lncRNA or microRNA-5'UTR interactions. As part of this resource (www.mircode.org), we generated custom tracks (bigBed format) for the UCSC browser, available at www.mircode.org/gencode_mirsites_highconsfamilies.bed and www.mircode.org/gencode_mirsites_medconsfamilies.bed I would like to propose these tracks for inclusion in your custom tracks page - please let me know what you think, and please contact me in case you need more information. Best wishes, Erik Larsson University of Gothenburg, Sweden _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
