Hi Dear UCSC group, I have a list of non coding rna genes from human(hg19) from lab. These are newly generated data. I need to check co-ordinate of orthologs in other 45 ucsc species ( primates, placental mammal, vertebrates etc). I used liftOver for this purpose, but it does not provide compatible result with multiz alignments, which is quite obvious as liftover is not optimized for multi alignment.
Now i am planning to use TRANSMAP. 1. Is Transmap appropriate for my purpose? 2. Is there any binary for transmap, I can not find it in ucsc site. 3. How to generate list of orthologs in 45 other species in bed or any standard format for a group of human(hg19) non-coding rnas ? -- Regards Tanvir MS student, KAUST <http://tanvir.alam.bd/> -- ------------------------------ This message and its contents, including attachments are intended solely for the original recipient. If you are not the intended recipient or have received this message in error, please notify me immediately and delete this message from your computer system. Any unauthorized use or distribution is prohibited. Please consider the environment before printing this email. _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
