commit: ba8d30305983c8aec216c07d62218879a12793c9 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Sun Mar 23 16:46:42 2014 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Sun Mar 23 16:46:42 2014 +0000 URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=ba8d3030
sci-biology/quast: a skeleton for a new python-based package, need help Package-Manager: portage-2.2.7 --- sci-biology/quast/ChangeLog | 9 +++++++++ sci-biology/quast/metadata.xml | 9 +++++++++ sci-biology/quast/quast-2.2.ebuild | 35 +++++++++++++++++++++++++++++++++++ 3 files changed, 53 insertions(+) diff --git a/sci-biology/quast/ChangeLog b/sci-biology/quast/ChangeLog new file mode 100644 index 0000000..578e834 --- /dev/null +++ b/sci-biology/quast/ChangeLog @@ -0,0 +1,9 @@ +# ChangeLog for sci-biology/quast +# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*quast-2.2 (23 Mar 2014) + + 23 Mar 2014; Martin Mokrejs <[email protected]> +metadata.xml, + +quast-2.2.ebuild: + sci-biology/quast: a skeleton for a new python-based package, need help diff --git a/sci-biology/quast/metadata.xml b/sci-biology/quast/metadata.xml new file mode 100644 index 0000000..07b5255 --- /dev/null +++ b/sci-biology/quast/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>[email protected]</email> + <name>Martin Mokrejs</name> + </maintainer> +</pkgmetadata> diff --git a/sci-biology/quast/quast-2.2.ebuild b/sci-biology/quast/quast-2.2.ebuild new file mode 100644 index 0000000..5f6c9b9 --- /dev/null +++ b/sci-biology/quast/quast-2.2.ebuild @@ -0,0 +1,35 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +inherit python + +DESCRIPTION="Compare quality of multiple genome assemblies to each other" +HOMEPAGE="http://bioinf.spbau.ru/QUAST"; +SRC_URI="http://sourceforge.net/projects/quast/files/"$P".tar.gz"; + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="" +IUSE="" + +DEPEND="dev-python/matplotlib + sci-biology/mummer + sci-biology/glimmerhmm" +# sci-biology/GAGE +# sci-biology/GeneMarkS +# sci-biology/MetaGeneMark" + +# the above packages need to be created first + +RDEPEND="${DEPEND} + dev-lang/perl" + +src_install(){ + dobin quast.py metaquast.py + dodoc manual.html CHANGES + + # TODO: install lib/ subdirectory contents into some PATH and PYTHON_PATH +}
