commit: b48f9a93a42d45079330c7b9ecfc27ba5570ac1b Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Sun Mar 23 17:10:18 2014 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Sun Mar 23 17:10:18 2014 +0000 URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=b48f9a93
sci-biology/breakdancer: a skeleton for a new package, needs perl help Package-Manager: portage-2.2.7 --- sci-biology/breakdancer/ChangeLog | 9 +++++++++ sci-biology/breakdancer/breakdancer-1.1.2.ebuild | 20 ++++++++++++++++++++ sci-biology/breakdancer/metadata.xml | 9 +++++++++ 3 files changed, 38 insertions(+) diff --git a/sci-biology/breakdancer/ChangeLog b/sci-biology/breakdancer/ChangeLog new file mode 100644 index 0000000..2dfc569 --- /dev/null +++ b/sci-biology/breakdancer/ChangeLog @@ -0,0 +1,9 @@ +# ChangeLog for sci-biology/breakdancer +# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*breakdancer-1.1.2 (23 Mar 2014) + + 23 Mar 2014; Martin Mokrejs <[email protected]> + +breakdancer-1.1.2.ebuild, +metadata.xml: + sci-biology/breakdancer: a skeleton for a new package, needs perl help diff --git a/sci-biology/breakdancer/breakdancer-1.1.2.ebuild b/sci-biology/breakdancer/breakdancer-1.1.2.ebuild new file mode 100644 index 0000000..6aff868 --- /dev/null +++ b/sci-biology/breakdancer/breakdancer-1.1.2.ebuild @@ -0,0 +1,20 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +DESCRIPTION="Genome-wide detection of structural variants from next generation paired-end sequencing reads" +HOMEPAGE="http://breakdancer.sourceforge.net"; +SRC_URI="http://sourceforge.net/projects/breakdancer/files/breakdancer-1.1.2_2013_03_08.zip"; + +LICENSE="GPL-3" +SLOT="0" +KEYWORDS="" +IUSE="" + +DEPEND="dev-lang/perl + dev-perl/Statistics-Descriptive + dev-perl/Math-CDF + sci-biology/samtools" +RDEPEND="${DEPEND}" diff --git a/sci-biology/breakdancer/metadata.xml b/sci-biology/breakdancer/metadata.xml new file mode 100644 index 0000000..07b5255 --- /dev/null +++ b/sci-biology/breakdancer/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>[email protected]</email> + <name>Martin Mokrejs</name> + </maintainer> +</pkgmetadata>
