commit: 36271ba96f6900f3219ae9606d6a3757ce21fbd7 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Tue Apr 15 09:25:33 2014 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Tue Apr 15 09:25:33 2014 +0000 URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=36271ba9
sci-biology/VelvetOptimiser: new package Package-Manager: portage-2.2.7 --- sci-biology/VelvetOptimiser/ChangeLog | 9 +++++++ .../VelvetOptimiser/VelvetOptimiser-2.2.5.ebuild | 29 ++++++++++++++++++++++ sci-biology/VelvetOptimiser/metadata.xml | 9 +++++++ 3 files changed, 47 insertions(+) diff --git a/sci-biology/VelvetOptimiser/ChangeLog b/sci-biology/VelvetOptimiser/ChangeLog new file mode 100644 index 0000000..573bfac --- /dev/null +++ b/sci-biology/VelvetOptimiser/ChangeLog @@ -0,0 +1,9 @@ +# ChangeLog for sci-biology/VelvetOptimiser +# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*VelvetOptimiser-2.2.5 (15 Apr 2014) + + 15 Apr 2014; Martin Mokrejs <[email protected]> + +VelvetOptimiser-2.2.5.ebuild, +metadata.xml: + sci-biology/VelvetOptimiser: new package diff --git a/sci-biology/VelvetOptimiser/VelvetOptimiser-2.2.5.ebuild b/sci-biology/VelvetOptimiser/VelvetOptimiser-2.2.5.ebuild new file mode 100644 index 0000000..1491603 --- /dev/null +++ b/sci-biology/VelvetOptimiser/VelvetOptimiser-2.2.5.ebuild @@ -0,0 +1,29 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +inherit perl-module + +DESCRIPTION="Optimise three primary parameter options (K, -exp_cov, -cov_cutoff) for Velvet sequence assembler." +HOMEPAGE="http://www.vicbioinformatics.com/software.velvetoptimiser.shtml"; +SRC_URI="http://www.vicbioinformatics.com/"${P}".tar.gz"; + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +DEPEND="" +RDEPEND="${DEPEND} + >=sci-biology/bioperl-1.4 + >=sci-biology/velvet-0.7.5.1 + >=dev-lang/perl-5.8" + +src_install(){ + dobin VelvetOptimiser.pl + insinto ${VENDOR_LIB}/${PN} + doins VelvetOpt/*.pm + dodoc README INSTALL CHANGELOG || die +} diff --git a/sci-biology/VelvetOptimiser/metadata.xml b/sci-biology/VelvetOptimiser/metadata.xml new file mode 100644 index 0000000..2bc8930 --- /dev/null +++ b/sci-biology/VelvetOptimiser/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>[email protected]</email> + <name>Martin Mokrejs</name> + </maintainer> +</pkgmetadata>
