commit: 244da94d9f3d1fa1a359a2663c2b8f309e94b634 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Sun Apr 10 20:24:43 2016 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Sun Apr 10 20:24:43 2016 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=244da94d
sci-biology/snpomatic: new package Package-Manager: portage-2.2.28 sci-biology/snpomatic/metadata.xml | 12 ++++++++++ sci-biology/snpomatic/snpomatic-9999.ebuild | 34 +++++++++++++++++++++++++++++ 2 files changed, 46 insertions(+) diff --git a/sci-biology/snpomatic/metadata.xml b/sci-biology/snpomatic/metadata.xml new file mode 100644 index 0000000..f68a1b6 --- /dev/null +++ b/sci-biology/snpomatic/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <maintainer type="person"> + <email>mmokr...@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> + <maintainer type="project"> + <email>sci-biol...@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> +</pkgmetadata> diff --git a/sci-biology/snpomatic/snpomatic-9999.ebuild b/sci-biology/snpomatic/snpomatic-9999.ebuild new file mode 100644 index 0000000..1d134f1 --- /dev/null +++ b/sci-biology/snpomatic/snpomatic-9999.ebuild @@ -0,0 +1,34 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +[ "$PV" == "9999" ] && inherit git-r3 + +DESCRIPTION="Stringent short-read aligner supporting filters and various output formats" +HOMEPAGE="https://github.com/magnusmanske/snpomatic"; +# http://snpomatic.sourceforge.net/snpomatic_manual.pdf +if [ "$PV" == "9999" ]; then + EGIT_REPO_URI="https://github.com/magnusmanske/snpomatic.git"; + KEYWORDS="" +else + SRC_URI="" + KEYWORDS="" +fi + +LICENSE="GPL-3" +SLOT="0" +IUSE="" + +DEPEND="" +RDEPEND="${DEPEND}" + +src_prepare(){ + sed -e 's/^CXX=/#CXX=/;s/^CXXFLAGS=/#CXXFLAGS=/' -i Makefile || die +} + +src_install(){ + dobin findknownsnps + dodoc doc/Manual.doc +}
