commit: 47b7a318764888d66daf35b7c8764c08a80f318d Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Sun Apr 10 20:28:25 2016 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Sun Apr 10 20:28:25 2016 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=47b7a318
sci-biology/reaper: new package Package-Manager: portage-2.2.28 sci-biology/reaper/metadata.xml | 12 ++++++++++++ sci-biology/reaper/reaper-15348.ebuild | 34 ++++++++++++++++++++++++++++++++++ 2 files changed, 46 insertions(+) diff --git a/sci-biology/reaper/metadata.xml b/sci-biology/reaper/metadata.xml new file mode 100644 index 0000000..f68a1b6 --- /dev/null +++ b/sci-biology/reaper/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <maintainer type="person"> + <email>mmokr...@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> + <maintainer type="project"> + <email>sci-biol...@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> +</pkgmetadata> diff --git a/sci-biology/reaper/reaper-15348.ebuild b/sci-biology/reaper/reaper-15348.ebuild new file mode 100644 index 0000000..854668d --- /dev/null +++ b/sci-biology/reaper/reaper-15348.ebuild @@ -0,0 +1,34 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +MY_PV="15-348" + +DESCRIPTION="Demultiplex, trim 3'-adapter/polyA and filter short read DNA sequences" +HOMEPAGE="http://www.ebi.ac.uk/~stijn/reaper"; +SRC_URI="http://www.ebi.ac.uk/~stijn/reaper/src/${PN}-${MY_PV}.tgz"; + +LICENSE="GPL-3" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +DEPEND="sys-libs/zlib" +RDEPEND="${DEPEND}" + +S="${WORKDIR}"/"${PN}"-"${MY_PV}"/src + +src_prepare(){ + sed -e 's/ -O3 / ${CFLAGS} /' -i Makefile || die +} + +src_compile(){ + emake +} + +src_install(){ + dobin reaper tally minion swan + dodoc ../doc/*.html +}
