commit: 84e0f638f095e67e26939f1f33c16c115745edca
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Wed Jul 27 08:56:40 2016 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Wed Jul 27 08:56:40 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=84e0f638
sci-biology/SnpEff: version bump
Package-Manager: portage-2.2.28
sci-biology/SnpEff/{SnpEff-4.1e.ebuild => SnpEff-4.2.ebuild} | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/sci-biology/SnpEff/SnpEff-4.1e.ebuild
b/sci-biology/SnpEff/SnpEff-4.2.ebuild
similarity index 92%
rename from sci-biology/SnpEff/SnpEff-4.1e.ebuild
rename to sci-biology/SnpEff/SnpEff-4.2.ebuild
index 7ba4236..ecdc205 100644
--- a/sci-biology/SnpEff/SnpEff-4.1e.ebuild
+++ b/sci-biology/SnpEff/SnpEff-4.2.ebuild
@@ -9,7 +9,7 @@ inherit java-pkg-2 java-ant-2
DESCRIPTION="Annotate SNP changes and predict their effect"
HOMEPAGE="http://snpeff.sourceforge.net";
SRC_URI="
- http://sourceforge.net/projects/snpeff/files/snpEff_v4_1e_core.zip
+ http://sourceforge.net/projects/snpeff/files/snpEff_v4_2_core.zip
http://snpeff.sourceforge.net/SnpSift.html -> ${P}.html"
LICENSE="LGPL-3"
@@ -37,7 +37,7 @@ src_install(){
# but portage does not install the .* files and subdirs, grr!
unzip \
"${DISTDIR}"/snpEff_v4_1e_core.zip -d "${D}"/usr/share \
- || die "failed to unzip ${DISTDIR}/snpEff_v4_1e_core.zip"
+ || die "failed to unzip ${DISTDIR}/snpEff_v4_2_core.zip"
sed \
-e 's#$HOME/tools/picard/#/usr/share/picard/lib/#' \
-i "${ED}"/usr/share/snpEff/scripts/annotate_demo_GATK.sh || die
