[gentoo-commits] proj/sci:master commit in: sci-biology/repeatmasker/

[Martin Mokrejs]

commit:     ca02fa6f25e71ab9956a8fd21a9fa1ae80e1ff49
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Tue Jan 31 18:04:26 2017 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Tue Jan 31 18:04:26 2017 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=ca02fa6f

sci-biology/repeatmasker: remove escaping backslashes so that the ebuild works 
again

Also drop the full paths from configure which otherwise needed EPREFIX mangling

Package-Manager: Portage-2.3.3, Repoman-2.3.1

 sci-biology/repeatmasker/repeatmasker-4.0.6-r3.ebuild | 16 ++++++++--------
 1 file changed, 8 insertions(+), 8 deletions(-)

diff --git a/sci-biology/repeatmasker/repeatmasker-4.0.6-r3.ebuild 
b/sci-biology/repeatmasker/repeatmasker-4.0.6-r3.ebuild
index 8155caa..a3ebd5a 100644
--- a/sci-biology/repeatmasker/repeatmasker-4.0.6-r3.ebuild
+++ b/sci-biology/repeatmasker/repeatmasker-4.0.6-r3.ebuild
@@ -35,8 +35,8 @@ src_prepare(){
 }
 
 src_configure() {
-       sed -e "s#/usr/bin/which#${EPREFIX}/usr/bin/which#g" -i 
"${S}"/configure || die
-       sed -e "s#/usr/bin/perl#${EPREFIX}/usr/bin/perl#g" -i "${S}"/configure 
|| die
+       sed -e "s#/usr/bin/which#which#g" -i "${S}"/configure || die
+       sed -e "s#/usr/bin/perl#perl#g" -i "${S}"/configure || die
        perl_set_version
        insinto ${VENDOR_LIB}
        sed -e "s#/usr/perl5/lib/#${VENDOR_LIB}#g" -i "${S}"/configure || die
@@ -53,18 +53,18 @@ src_configure() {
        # below try to define paths to trf, cross_match, rmblast and nhmmer as 
search tools
        echo "
 env
-\"${S}\"
-"${EPREFIX}"/opt/bin
+${S}
+${EPREFIX}/opt/trf/bin
 1
-"${EPREFIX}"/usr/bin
+${EPREFIX}/usr/bin
 Y
 2
-"${EPREFIX}"/usr/bin
+${EPREFIX}/usr/bin
 Y
 4
-"${EPREFIX}"/usr/bin
+${EPREFIX}/usr/bin
 Y
-5" | "${S}/configure" || die "configure failed"
+5" | "${S}"/configure || die "configure failed"
        sed -i -e "s|use lib $FindBin::RealBin;|use lib 
${EPREFIX}/usr/share/${PN}/lib;|" \
                -e 
"s|.*\(taxonomy.dat\)|${EPREFIX}/usr/share/${PN}/Libraries/\1|" \
                -e "/$REPEATMASKER_DIR/ 
s|$FindBin::RealBin|${EPREFIX}/usr/share/${PN}|" \