commit: 3dcd860e419d637e622ff61ee6f0acec2916e7d7 Author: David Seifert <soap <AT> gentoo <DOT> org> AuthorDate: Thu Nov 16 13:15:49 2017 +0000 Commit: David Seifert <soap <AT> gentoo <DOT> org> CommitDate: Thu Nov 16 13:16:56 2017 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=3dcd860e
sci-biology/kallisto: Initial addition Closes: https://github.com/gentoo/sci/pull/814 Package-Manager: Portage-2.3.14, Repoman-2.3.6 sci-biology/kallisto/Manifest | 1 + sci-biology/kallisto/kallisto-0.43.1.ebuild | 25 +++++++++++++++++++++++++ sci-biology/kallisto/kallisto-9999.ebuild | 25 +++++++++++++++++++++++++ sci-biology/kallisto/metadata.xml | 19 +++++++++++++++++++ 4 files changed, 70 insertions(+) diff --git a/sci-biology/kallisto/Manifest b/sci-biology/kallisto/Manifest new file mode 100644 index 00000000000..7cb0b257593 --- /dev/null +++ b/sci-biology/kallisto/Manifest @@ -0,0 +1 @@ +DIST kallisto-0.43.1.tar.gz 1067076 SHA256 2164938c2c61c04e338c4c132cf749f56d39e6f0b4c517121bca1fbc218e430e SHA512 c7725a2d649cf96fcd24a20d542b409777cfd9fe97c09f0f459a5ec2981e0a4f5f0ea03d76d3ec3edf0e498c799fc7d074d442d5e35ddb4043d1f7634619dda8 WHIRLPOOL a0f8c2cab5afa3df7cf7f540319d32a99d698ac50e4574c941972fff789e9d8e258124153d16a777180595b201d91e240e5ffd17994cc2571e71f6fcb47fdeee diff --git a/sci-biology/kallisto/kallisto-0.43.1.ebuild b/sci-biology/kallisto/kallisto-0.43.1.ebuild new file mode 100644 index 00000000000..0020e891a03 --- /dev/null +++ b/sci-biology/kallisto/kallisto-0.43.1.ebuild @@ -0,0 +1,25 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit cmake-utils + +DESCRIPTION="Near-optimal RNA-Seq quantification" +HOMEPAGE="http://pachterlab.github.io/kallisto/"; + +if [[ ${PV} == *9999 ]]; then + inherit git-r3 + EGIT_REPO_URI="https://github.com/pachterlab/kallisto.git"; +else + SRC_URI="https://github.com/pachterlab/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz" + KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +fi + +LICENSE="BSD" +SLOT="0" + +RDEPEND=" + sci-libs/hdf5:= + sys-libs/zlib:=" +DEPEND="${RDEPEND}" diff --git a/sci-biology/kallisto/kallisto-9999.ebuild b/sci-biology/kallisto/kallisto-9999.ebuild new file mode 100644 index 00000000000..0020e891a03 --- /dev/null +++ b/sci-biology/kallisto/kallisto-9999.ebuild @@ -0,0 +1,25 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit cmake-utils + +DESCRIPTION="Near-optimal RNA-Seq quantification" +HOMEPAGE="http://pachterlab.github.io/kallisto/"; + +if [[ ${PV} == *9999 ]]; then + inherit git-r3 + EGIT_REPO_URI="https://github.com/pachterlab/kallisto.git"; +else + SRC_URI="https://github.com/pachterlab/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz" + KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +fi + +LICENSE="BSD" +SLOT="0" + +RDEPEND=" + sci-libs/hdf5:= + sys-libs/zlib:=" +DEPEND="${RDEPEND}" diff --git a/sci-biology/kallisto/metadata.xml b/sci-biology/kallisto/metadata.xml new file mode 100644 index 00000000000..aba0d0ebf33 --- /dev/null +++ b/sci-biology/kallisto/metadata.xml @@ -0,0 +1,19 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <maintainer type="person"> + <email>[email protected]</email> + <name>Michael Schubert</name> + </maintainer> + <maintainer type="project"> + <email>[email protected]</email> + <name>Proxy Maintainers</name> + </maintainer> + <maintainer type="project"> + <email>[email protected]</email> + <name>Gentoo Biology Project</name> + </maintainer> + <upstream> + <remote-id type="github">pachterlab/kallisto</remote-id> + </upstream> +</pkgmetadata>
