commit: cd2d3189dadad62ef240af7f543861f2f621bf4d Author: David Seifert <soap <AT> gentoo <DOT> org> AuthorDate: Thu Nov 16 11:39:24 2017 +0000 Commit: David Seifert <soap <AT> gentoo <DOT> org> CommitDate: Thu Nov 16 13:16:37 2017 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=cd2d3189
sci-biology/HTSeq: Initial addition Closes: https://github.com/gentoo/sci/pull/814 Package-Manager: Portage-2.3.14, Repoman-2.3.6 sci-biology/HTSeq/HTSeq-0.9.1.ebuild | 31 +++++++++++++++++++++++++++++++ sci-biology/HTSeq/HTSeq-9999.ebuild | 31 +++++++++++++++++++++++++++++++ sci-biology/HTSeq/Manifest | 1 + sci-biology/HTSeq/metadata.xml | 19 +++++++++++++++++++ 4 files changed, 82 insertions(+) diff --git a/sci-biology/HTSeq/HTSeq-0.9.1.ebuild b/sci-biology/HTSeq/HTSeq-0.9.1.ebuild new file mode 100644 index 00000000000..446bbef36ef --- /dev/null +++ b/sci-biology/HTSeq/HTSeq-0.9.1.ebuild @@ -0,0 +1,31 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +PYTHON_COMPAT=( python2_7 python3_{4,5,6} ) + +inherit distutils-r1 + +DESCRIPTION="Python support for SAM/BAM/Bowtie/FASTA/Q/GFF/GTF files" +HOMEPAGE="https://htseq.readthedocs.io/"; + +if [[ ${PV} == *9999 ]]; then + inherit git-r3 + EGIT_REPO_URI="https://github.com/simon-anders/htseq.git"; +else + SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz" + KEYWORDS="~amd64" +fi + +LICENSE="GPL-3+" +SLOT="0" + +RDEPEND=" + dev-python/numpy[${PYTHON_USEDEP}] + dev-python/matplotlib[${PYTHON_USEDEP}] + sci-biology/pysam[${PYTHON_USEDEP}]" +DEPEND=" + ${RDEPEND} + >=dev-lang/swig-3.0.8 + dev-python/cython[${PYTHON_USEDEP}]" diff --git a/sci-biology/HTSeq/HTSeq-9999.ebuild b/sci-biology/HTSeq/HTSeq-9999.ebuild new file mode 100644 index 00000000000..446bbef36ef --- /dev/null +++ b/sci-biology/HTSeq/HTSeq-9999.ebuild @@ -0,0 +1,31 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +PYTHON_COMPAT=( python2_7 python3_{4,5,6} ) + +inherit distutils-r1 + +DESCRIPTION="Python support for SAM/BAM/Bowtie/FASTA/Q/GFF/GTF files" +HOMEPAGE="https://htseq.readthedocs.io/"; + +if [[ ${PV} == *9999 ]]; then + inherit git-r3 + EGIT_REPO_URI="https://github.com/simon-anders/htseq.git"; +else + SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz" + KEYWORDS="~amd64" +fi + +LICENSE="GPL-3+" +SLOT="0" + +RDEPEND=" + dev-python/numpy[${PYTHON_USEDEP}] + dev-python/matplotlib[${PYTHON_USEDEP}] + sci-biology/pysam[${PYTHON_USEDEP}]" +DEPEND=" + ${RDEPEND} + >=dev-lang/swig-3.0.8 + dev-python/cython[${PYTHON_USEDEP}]" diff --git a/sci-biology/HTSeq/Manifest b/sci-biology/HTSeq/Manifest new file mode 100644 index 00000000000..6d90d56d352 --- /dev/null +++ b/sci-biology/HTSeq/Manifest @@ -0,0 +1 @@ +DIST HTSeq-0.9.1.tar.gz 596941 SHA256 af5bba775e3fb45ed4cde64c691ebef36b0bf7a86efd35c884ad0734c27ad485 SHA512 ec3e1ec9cf66918f2afacf7997ab5da02015896ddd97260f5abec8343a9013cf6e857872be38b2cd3bb5bde655abe602a3c22c32448190f32e1a8f1153a19344 WHIRLPOOL da3f1d867f9cfa05e34321f75fb34ef79e943476ee650d4689e320078821703721168bfdd9e46f10f1319cc1006771cd205a80569549d21719d38aea6b0be3a8 diff --git a/sci-biology/HTSeq/metadata.xml b/sci-biology/HTSeq/metadata.xml new file mode 100644 index 00000000000..e9ba18c35b3 --- /dev/null +++ b/sci-biology/HTSeq/metadata.xml @@ -0,0 +1,19 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <maintainer type="person"> + <email>mmokr...@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> + <maintainer type="project"> + <email>proxy-ma...@gentoo.org</email> + <name>Proxy Maintainers</name> + </maintainer> + <maintainer type="project"> + <email>sci-biol...@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> + <upstream> + <remote-id type="pypi">HTSeq</remote-id> + </upstream> +</pkgmetadata>
