commit: 86acc7ebf1e4ce5be9437507bed6e607a3bcfe6c Author: Andreas Sturmlechner <asturm <AT> gentoo <DOT> org> AuthorDate: Sat Mar 3 16:08:26 2018 +0000 Commit: Andreas Sturmlechner <asturm <AT> gentoo <DOT> org> CommitDate: Sat Mar 3 17:44:08 2018 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=86acc7eb
sci-biology/amos: Drop USE=qt4 Bug: https://bugs.gentoo.org/645140 Package-Manager: Portage-2.3.24, Repoman-2.3.6 sci-biology/amos/amos-3.1.0-r4.ebuild | 52 +++++++++++++++++++++++++++++++++++ 1 file changed, 52 insertions(+) diff --git a/sci-biology/amos/amos-3.1.0-r4.ebuild b/sci-biology/amos/amos-3.1.0-r4.ebuild new file mode 100644 index 00000000000..0dbcaffd81d --- /dev/null +++ b/sci-biology/amos/amos-3.1.0-r4.ebuild @@ -0,0 +1,52 @@ +# Copyright 1999-2018 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +PYTHON_COMPAT=( python2_7 ) + +inherit autotools flag-o-matic python-single-r1 + +DESCRIPTION="A Modular, Open-Source whole genome assembler" +HOMEPAGE="http://amos.sourceforge.net/"; +SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz + https://dev.gentoo.org/~soap/distfiles/${PN}-3.1.0-fix-c++14.patch.bz2"; + +LICENSE="Artistic" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" +REQUIRED_USE="${PYTHON_REQUIRED_USE}" + +DEPEND="" +RDEPEND="${DEPEND} + ${PYTHON_DEPS} + dev-perl/DBI + dev-perl/Statistics-Descriptive + sci-biology/mummer" + +PATCHES=( + "${FILESDIR}"/${P}-gcc-4.7.patch + "${FILESDIR}"/${P}-goBambus2.py-indent-and-cleanup.patch + "${WORKDIR}"/${P}-fix-c++14.patch + "${FILESDIR}"/${P}-qa-Wformat.patch + "${FILESDIR}"/${P}-fix-build-system.patch +) + +src_prepare() { + default + eautoreconf + + # prevent GCC 6 log pollution due + # to hash_map deprecation in C++11 + append-cxxflags -Wno-cpp +} + +src_configure() { + econf --with-qmake-qt4=no +} + +src_install() { + default + python_fix_shebang "${ED%/}"/usr/bin/goBambus2 +}
