commit: e4597e0d4ab0a86067e373e8e272386cfec746a3 Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> AuthorDate: Sat Mar 20 10:31:25 2021 +0000 Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> CommitDate: Sat Mar 20 10:31:25 2021 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=e4597e0d
sci-biology/tclust: remove masked package Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net> profiles/package.mask | 5 --- sci-biology/tclust/files/tclust-110625-build.patch | 43 ---------------------- sci-biology/tclust/metadata.xml | 12 ------ sci-biology/tclust/tclust-110625.ebuild | 29 --------------- 4 files changed, 89 deletions(-) diff --git a/profiles/package.mask b/profiles/package.mask index 67acb2dcd..902179d2a 100644 --- a/profiles/package.mask +++ b/profiles/package.mask @@ -30,11 +30,6 @@ #--- END OF EXAMPLES --- -# Andrew Ammerlaan <[email protected]> (06 March 2021) -# Does not build, last updated in 2009 -# Masked for removal in 14 days, if you need this please complain -sci-biology/tclust - # Andrew Ammerlaan <[email protected]> (06 March 2021) # Does not compile with newer boost versions because endian.hpp # was removed. diff --git a/sci-biology/tclust/files/tclust-110625-build.patch b/sci-biology/tclust/files/tclust-110625-build.patch deleted file mode 100644 index 9474916af..000000000 --- a/sci-biology/tclust/files/tclust-110625-build.patch +++ /dev/null @@ -1,43 +0,0 @@ - Makefile | 9 ++++----- - 1 files changed, 4 insertions(+), 5 deletions(-) - -diff --git a/Makefile b/Makefile -index f4f69f1..30ba16e 100644 ---- a/Makefile -+++ b/Makefile -@@ -11,8 +11,8 @@ SYSTYPE := $(shell uname) - - # C compiler - --CC := g++ --CFLAGS = -O2 -Wall ${SEARCHDIRS} -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_REENTRANT -fno-exceptions -fno-rtti -fno-strict-aliasing -+CC ?= g++ -+CXXFLAGS += -Wall ${SEARCHDIRS} -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_REENTRANT -fno-exceptions -fno-rtti -fno-strict-aliasing - - %.o : %.c - ${CC} ${CFLAGS} -c $< -o $@ -@@ -24,7 +24,7 @@ CFLAGS = -O2 -Wall ${SEARCHDIRS} -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_ - ${CC} ${CFLAGS} -c $< -o $@ - - %.o : %.cpp -- ${CC} ${CFLAGS} -c $< -o $@ -+ ${CXX} ${CXXFLAGS} -c $< -o $@ - - %.o : %.cxx - ${CC} ${CFLAGS} -c $< -o $@ -@@ -32,14 +32,13 @@ CFLAGS = -O2 -Wall ${SEARCHDIRS} -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_ - # C/C++ linker - - LINKER := g++ --LDFLAGS = - LOADLIBES := - - .PHONY : all - all: tclust - - tclust: ./tclust.o ${GCLDIR}/GBase.o ${GCLDIR}/GStr.o ${GCLDIR}/GArgs.o -- ${LINKER} ${LDFLAGS} -o $@ ${filter-out %.a %.so, $^} ${LOADLIBES} -+ ${CXX} ${LDFLAGS} -o $@ ${filter-out %.a %.so, $^} ${LOADLIBES} - - # target for removing all object files - diff --git a/sci-biology/tclust/metadata.xml b/sci-biology/tclust/metadata.xml deleted file mode 100644 index 138cb7705..000000000 --- a/sci-biology/tclust/metadata.xml +++ /dev/null @@ -1,12 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <maintainer type="person"> - <email>[email protected]</email> - <name>Martin Mokrejs</name> - </maintainer> - <maintainer type="project"> - <email>[email protected]</email> - <name>Gentoo Biology Project</name> - </maintainer> -</pkgmetadata> diff --git a/sci-biology/tclust/tclust-110625.ebuild b/sci-biology/tclust/tclust-110625.ebuild deleted file mode 100644 index e10d495bc..000000000 --- a/sci-biology/tclust/tclust-110625.ebuild +++ /dev/null @@ -1,29 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -inherit eutils toolchain-funcs - -DESCRIPTION="Transitive closure clustering tool with overlap filtering options" -HOMEPAGE="https://web.archive.org/web/20140726030702/http://compbio.dfci.harvard.edu/tgi/software/"; -SRC_URI=" - ftp://occams.dfci.harvard.edu/pub/bio/tgi/software/tgicl/${PN}.tar.gz -> ${P}.tar.gz - ftp://occams.dfci.harvard.edu/pub/bio/tgi/software/tgicl/gclib.tar.gz -> gclib-${PV}.tar.gz" - -LICENSE="Artistic" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -S=${WORKDIR}/${PN} - -src_prepare() { - epatch "${FILESDIR}"/${P}-build.patch - tc-export CC CXX -} - -src_install() { - dobin ${PN} - dodoc README -}
