commit: cf0660b8a62bacbd88947241789d22f7d4e1946b Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> AuthorDate: Sat Mar 20 10:30:58 2021 +0000 Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> CommitDate: Sat Mar 20 10:30:58 2021 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=cf0660b8
sci-biology/sclust: remove masked package Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net> profiles/package.mask | 5 ----- sci-biology/sclust/metadata.xml | 12 ------------ sci-biology/sclust/sclust-0.1.ebuild | 36 ------------------------------------ 3 files changed, 53 deletions(-) diff --git a/profiles/package.mask b/profiles/package.mask index ec0ed5550..67acb2dcd 100644 --- a/profiles/package.mask +++ b/profiles/package.mask @@ -30,11 +30,6 @@ #--- END OF EXAMPLES --- -# Andrew Ammerlaan <[email protected]> (06 March 2021) -# Does not fetch, last update in 2009 -# Masked for removal in 14 days, if you need this please complain -sci-biology/sclust - # Andrew Ammerlaan <[email protected]> (06 March 2021) # Does not build, last updated in 2009 # Masked for removal in 14 days, if you need this please complain diff --git a/sci-biology/sclust/metadata.xml b/sci-biology/sclust/metadata.xml deleted file mode 100644 index 138cb7705..000000000 --- a/sci-biology/sclust/metadata.xml +++ /dev/null @@ -1,12 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <maintainer type="person"> - <email>[email protected]</email> - <name>Martin Mokrejs</name> - </maintainer> - <maintainer type="project"> - <email>[email protected]</email> - <name>Gentoo Biology Project</name> - </maintainer> -</pkgmetadata> diff --git a/sci-biology/sclust/sclust-0.1.ebuild b/sci-biology/sclust/sclust-0.1.ebuild deleted file mode 100644 index 9ad558e20..000000000 --- a/sci-biology/sclust/sclust-0.1.ebuild +++ /dev/null @@ -1,36 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -DESCRIPTION="Seeded clustering tool by processing pairwise alignments" -HOMEPAGE="https://web.archive.org/web/20140726030702/http://compbio.dfci.harvard.edu/tgi/software/"; -SRC_URI=" - ftp://occams.dfci.harvard.edu/pub/bio/tgi/software/tgicl/${PN}.tar.gz -> ${P}.tar.gz - ftp://occams.dfci.harvard.edu/pub/bio/tgi/software/tgicl/cdbfasta.tar.gz"; - -LICENSE="Artistic" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -S=${WORKDIR} - -src_prepare() { - # we need gclib from cdbfasta.tar.gz bundle which has fewer files than tgi_cpp_library.tar.gz wbut has e.g. GStr.h - sed -i 's/CFLAGS[ ]*=/CFLAGS :=/; s/-D_REENTRANT/-D_REENTRANT \${CFLAGS}/; s/CFLAGS[ ]*:=[ ]*-O2$//' "${S}"/${PN}/Makefile || die "Failed to run sed" - sed -i 's#GCLDIR := ../gclib#GCLDIR := ../cdbfasta/gclib#' "${S}"/"${PN}"/Makefile || die - cd ${PN} || die - ln -s ../cdbfasta/gcl . || die "Cannot make a softlink" -} - -src_compile() { - cd ${PN} || die - default -} - -src_install() { - cd ${PN} || die - dobin ${PN} - newdoc README README.${PN} -}
