jlec 14/10/17 13:51:56 Added: seqan-1.4.2-include.patch seqan-1.4.2-shared.patch Log: sci-biology/seqan: Version BUmp (Portage version: 2.2.14_rc1/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
Revision Changes Path 1.1 sci-biology/seqan/files/seqan-1.4.2-include.patch file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/seqan/files/seqan-1.4.2-include.patch?rev=1.1&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/seqan/files/seqan-1.4.2-include.patch?rev=1.1&content-type=text/plain Index: seqan-1.4.2-include.patch =================================================================== core/include/seqan/index/index_qgram_openaddressing.h | 2 ++ 1 file changed, 2 insertions(+) diff --git a/core/include/seqan/index/index_qgram_openaddressing.h b/core/include/seqan/index/index_qgram_openaddressing.h index 4a6c2e6..8cc9a42 100644 --- a/core/include/seqan/index/index_qgram_openaddressing.h +++ b/core/include/seqan/index/index_qgram_openaddressing.h @@ -35,6 +35,8 @@ #ifndef SEQAN_HEADER_INDEX_QGRAM_OPENADRESSING_H #define SEQAN_HEADER_INDEX_QGRAM_OPENADRESSING_H +#include <smmintrin.h> + namespace SEQAN_NAMESPACE_MAIN { 1.1 sci-biology/seqan/files/seqan-1.4.2-shared.patch file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/seqan/files/seqan-1.4.2-shared.patch?rev=1.1&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/seqan/files/seqan-1.4.2-shared.patch?rev=1.1&content-type=text/plain Index: seqan-1.4.2-shared.patch =================================================================== util/cmake/SeqAnBuildSystem.cmake | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/util/cmake/SeqAnBuildSystem.cmake b/util/cmake/SeqAnBuildSystem.cmake index bcba2c0..d53cd01 100644 --- a/util/cmake/SeqAnBuildSystem.cmake +++ b/util/cmake/SeqAnBuildSystem.cmake @@ -144,10 +144,10 @@ macro (seqan_register_apps) set (CMAKE_CXX_FLAGS_DEBUG "${CMAKE_CXX_FLAGS_DEBUG} -DSEQAN_ENABLE_DEBUG=1") # enable static linkage for seqan apps - if (CMAKE_COMPILER_IS_GNUCXX OR COMPILER_IS_CLANG AND NOT MINGW) - set(CMAKE_FIND_LIBRARY_SUFFIXES ".a") - set(CMAKE_EXE_LINKER_FLAGS "-static-libgcc -static-libstdc++") - endif () +# if (CMAKE_COMPILER_IS_GNUCXX OR COMPILER_IS_CLANG AND NOT MINGW) +# set(CMAKE_FIND_LIBRARY_SUFFIXES ".a") +# set(CMAKE_EXE_LINKER_FLAGS "-static-libgcc -static-libstdc++") +# endif () # Get all direct entries of the current source directory into ENTRIES. file (GLOB ENTRIES
