commit: a8a5c5f0604dff58790a343b5d6d3cb187a5261a Author: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org> AuthorDate: Tue Jan 25 09:09:10 2022 +0000 Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org> CommitDate: Tue Jan 25 09:09:10 2022 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=a8a5c5f0
sci-biology/wcd: remove dead package last update 2018 Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org> sci-biology/wcd/files/wcd-0.6.3-impl-decl.patch | 15 -------- sci-biology/wcd/files/wcd-0.6.3-ldflags.patch | 16 --------- sci-biology/wcd/metadata.xml | 12 ------- sci-biology/wcd/wcd-0.6.3_p20180430.ebuild | 46 ------------------------- 4 files changed, 89 deletions(-) diff --git a/sci-biology/wcd/files/wcd-0.6.3-impl-decl.patch b/sci-biology/wcd/files/wcd-0.6.3-impl-decl.patch deleted file mode 100644 index 15d851577..000000000 --- a/sci-biology/wcd/files/wcd-0.6.3-impl-decl.patch +++ /dev/null @@ -1,15 +0,0 @@ - src/auxcluster.c | 1 + - 1 file changed, 1 insertion(+) - -diff --git a/src/auxcluster.c b/src/auxcluster.c -index ac00a0f..e98f19f 100644 ---- a/src/auxcluster.c -+++ b/src/auxcluster.c -@@ -2,6 +2,7 @@ - - #include "common.h" - #include "strings.h" -+#include <string.h> - #include "assert.h" - - extern SeqInfoPtr seqInfo; diff --git a/sci-biology/wcd/files/wcd-0.6.3-ldflags.patch b/sci-biology/wcd/files/wcd-0.6.3-ldflags.patch deleted file mode 100644 index d697d00b7..000000000 --- a/sci-biology/wcd/files/wcd-0.6.3-ldflags.patch +++ /dev/null @@ -1,16 +0,0 @@ - src/Makefile.am | 2 +- - 1 file changed, 1 insertion(+), 1 deletion(-) - -diff --git a/src/Makefile.am b/src/Makefile.am -index e986a91..ff87e29 100644 ---- a/src/Makefile.am -+++ b/src/Makefile.am -@@ -7,7 +7,7 @@ wcd_CFLAGS += -DMPI - endif - if PTHREADS - wcd_CFLAGS += -DPTHREADS --wcd_LDFLAGS += -lpthread -+wcd_LDADD = -lpthread - endif - if !COMPILER - wcd_CFLAGS += -DNOINLINE diff --git a/sci-biology/wcd/metadata.xml b/sci-biology/wcd/metadata.xml deleted file mode 100644 index 138cb7705..000000000 --- a/sci-biology/wcd/metadata.xml +++ /dev/null @@ -1,12 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <maintainer type="person"> - <email>[email protected]</email> - <name>Martin Mokrejs</name> - </maintainer> - <maintainer type="project"> - <email>[email protected]</email> - <name>Gentoo Biology Project</name> - </maintainer> -</pkgmetadata> diff --git a/sci-biology/wcd/wcd-0.6.3_p20180430.ebuild b/sci-biology/wcd/wcd-0.6.3_p20180430.ebuild deleted file mode 100644 index 6593d97ed..000000000 --- a/sci-biology/wcd/wcd-0.6.3_p20180430.ebuild +++ /dev/null @@ -1,46 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -COMMIT="aee525029bb661b633097e989c6fe2eaa93d2def" - -DESCRIPTION="EST sequence clustering: d2 function, edit distance, common word heuristics" -HOMEPAGE="https://shaze.github.io/wcdest/"; -SRC_URI="https://github.com/shaze/wcdest/archive/${COMMIT}.tar.gz -> ${P}.tar.gz - http://www.bioinf.wits.ac.za/~scott/wcd.html - http://www.bioinf.wits.ac.za/~scott/wcd.pdf"; - -LICENSE="GPL-2" -SLOT="0" -KEYWORDS="" - -IUSE="doc mpi threads" - -# This code (0.4.1 at least) has been tested using LAMMPI (RedHat, Suse, -# MacOS X), MPICH (Ubuntu) and MVAPICH (Suse) -DEPEND="mpi? ( sys-cluster/mpich2 )" - -PATCHES=( - "${FILESDIR}"/${PN}-0.6.3-ldflags.patch - "${FILESDIR}"/${PN}-0.6.3-impl-decl.patch -) - -S="${WORKDIR}/${PN}est-${COMMIT}/code" - -src_configure(){ - econf \ - $(use_enable mpi) \ - $(use_enable threads pthreads) -} - -src_compile() { - default - use doc && emake pdf info html -} - -src_install() { - use doc && HTML_DOCS=( doc/wcd.html doc/wcd.pdf doc/wcd.texi ) - emake install PREFIX=/usr LIBDIR="${D}"/usr/$(get_libdir) - dodoc "${DISTDIR}"/wcd.* -}
