commit: 739bbba2330bc2891ca90633e1fc70d56a08eece Author: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org> AuthorDate: Fri Mar 17 12:19:12 2023 +0000 Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org> CommitDate: Fri Mar 17 13:34:46 2023 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=739bbba2
Revert "dev-python/snakemake: treeclean" This reverts commit f853476e85be13cb1ac9f36e8fbb25ca5e12c464. Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org> dev-python/snakemake/metadata.xml | 13 +++++++ dev-python/snakemake/snakemake-5.32.2.ebuild | 56 ++++++++++++++++++++++++++++ 2 files changed, 69 insertions(+) diff --git a/dev-python/snakemake/metadata.xml b/dev-python/snakemake/metadata.xml new file mode 100644 index 000000000..d9550c50f --- /dev/null +++ b/dev-python/snakemake/metadata.xml @@ -0,0 +1,13 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <maintainer type="person"> + <email>[email protected]</email> + <name>Michael Schubert</name> + </maintainer> + <upstream> + <remote-id type="bitbucket">johanneskoester/snakemake</remote-id> + <remote-id type="pypi">snakemake</remote-id> + <remote-id type="github">snakemake/snakemake</remote-id> + </upstream> +</pkgmetadata> diff --git a/dev-python/snakemake/snakemake-5.32.2.ebuild b/dev-python/snakemake/snakemake-5.32.2.ebuild new file mode 100644 index 000000000..59d2f061a --- /dev/null +++ b/dev-python/snakemake/snakemake-5.32.2.ebuild @@ -0,0 +1,56 @@ +# Copyright 1999-2022 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +PYTHON_COMPAT=( python3_{8..9} ) +DISTUTILS_USE_SETUPTOOLS=rdepend + +inherit distutils-r1 + +DESCRIPTION="Make-like task language" +HOMEPAGE="https://snakemake.readthedocs.io"; +SRC_URI="https://github.com/${PN}/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="MIT" +SLOT="0" +KEYWORDS="~amd64 ~x86" + +# missing test dep google.cloud +RESTRICT="test" + +BDEPEND="test? ( + dev-python/requests-mock[${PYTHON_USEDEP}] + dev-python/google-api-python-client[${PYTHON_USEDEP}] + dev-python/jinja[${PYTHON_USEDEP}] + dev-python/networkx[${PYTHON_USEDEP}] + dev-python/pygments[${PYTHON_USEDEP}] + dev-python/pygraphviz[${PYTHON_USEDEP}] + dev-python/oauth2client[${PYTHON_USEDEP}] + net-libs/google-cloud-cpp +)" + +RDEPEND=" + dev-python/appdirs[${PYTHON_USEDEP}] + dev-python/ConfigArgParse[${PYTHON_USEDEP}] + dev-python/datrie[${PYTHON_USEDEP}] + dev-python/docutils[${PYTHON_USEDEP}] + dev-python/GitPython[${PYTHON_USEDEP}] + dev-python/jsonschema[${PYTHON_USEDEP}] + dev-python/nbformat[${PYTHON_USEDEP}] + dev-python/psutil[${PYTHON_USEDEP}] + dev-python/pyyaml[${PYTHON_USEDEP}] + dev-python/ratelimit[${PYTHON_USEDEP}] + dev-python/requests[${PYTHON_USEDEP}] + dev-python/toposort[${PYTHON_USEDEP}] + dev-python/wrapt[${PYTHON_USEDEP}] + sci-mathematics/pulp[${PYTHON_USEDEP}] +" + +distutils_enable_sphinx docs \ + dev-python/sphinxcontrib-napoleon \ + dev-python/sphinx-argparse \ + dev-python/sphinx_rtd_theme \ + dev-python/docutils \ + dev-python/recommonmark +distutils_enable_tests pytest
