commit: 7b331f81eaab5fcd252a31f65cedf3af2a62e1c3
Author: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
AuthorDate: Fri Mar 17 13:33:26 2023 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Fri Mar 17 13:35:17 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=7b331f81
dev-python/snakemake: add 7.24.2, drop 5.32.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>
...emake-5.32.2.ebuild => snakemake-7.24.2.ebuild} | 47 +++++++++++++---------
1 file changed, 28 insertions(+), 19 deletions(-)
diff --git a/dev-python/snakemake/snakemake-5.32.2.ebuild
b/dev-python/snakemake/snakemake-7.24.2.ebuild
similarity index 54%
rename from dev-python/snakemake/snakemake-5.32.2.ebuild
rename to dev-python/snakemake/snakemake-7.24.2.ebuild
index 59d2f061a..fb9895514 100644
--- a/dev-python/snakemake/snakemake-5.32.2.ebuild
+++ b/dev-python/snakemake/snakemake-7.24.2.ebuild
@@ -1,47 +1,55 @@
# Copyright 1999-2022 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=7
+EAPI=8
-PYTHON_COMPAT=( python3_{8..9} )
-DISTUTILS_USE_SETUPTOOLS=rdepend
+PYTHON_COMPAT=( python3_{10..11} )
+DISTUTILS_USE_PEP517=setuptools
inherit distutils-r1
DESCRIPTION="Make-like task language"
HOMEPAGE="https://snakemake.readthedocs.io";
-SRC_URI="https://github.com/${PN}/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz"
+SRC_URI="https://github.com/${PN}/${PN}/archive/v${PV}.tar.gz ->
${P}.gh.tar.gz"
LICENSE="MIT"
SLOT="0"
-KEYWORDS="~amd64 ~x86"
+KEYWORDS="~amd64"
-# missing test dep google.cloud
+# cannot import name '_helpers' from 'google.cloud'
RESTRICT="test"
-BDEPEND="test? (
- dev-python/requests-mock[${PYTHON_USEDEP}]
- dev-python/google-api-python-client[${PYTHON_USEDEP}]
- dev-python/jinja[${PYTHON_USEDEP}]
- dev-python/networkx[${PYTHON_USEDEP}]
- dev-python/pygments[${PYTHON_USEDEP}]
- dev-python/pygraphviz[${PYTHON_USEDEP}]
- dev-python/oauth2client[${PYTHON_USEDEP}]
- net-libs/google-cloud-cpp
-)"
+BDEPEND="
+ dev-python/tomli[${PYTHON_USEDEP}]
+ test? (
+ dev-python/requests-mock[${PYTHON_USEDEP}]
+ dev-python/google-api-python-client[${PYTHON_USEDEP}]
+ dev-python/networkx[${PYTHON_USEDEP}]
+ dev-python/pygments[${PYTHON_USEDEP}]
+ dev-python/pygraphviz[${PYTHON_USEDEP}]
+ net-libs/google-cloud-cpp
+ )
+"
RDEPEND="
dev-python/appdirs[${PYTHON_USEDEP}]
dev-python/ConfigArgParse[${PYTHON_USEDEP}]
+ dev-python/connection_pool[${PYTHON_USEDEP}]
dev-python/datrie[${PYTHON_USEDEP}]
dev-python/docutils[${PYTHON_USEDEP}]
dev-python/GitPython[${PYTHON_USEDEP}]
+ dev-python/humanfriendly[${PYTHON_USEDEP}]
+ dev-python/jinja[${PYTHON_USEDEP}]
dev-python/jsonschema[${PYTHON_USEDEP}]
dev-python/nbformat[${PYTHON_USEDEP}]
dev-python/psutil[${PYTHON_USEDEP}]
dev-python/pyyaml[${PYTHON_USEDEP}]
- dev-python/ratelimit[${PYTHON_USEDEP}]
dev-python/requests[${PYTHON_USEDEP}]
+ dev-python/reretry[${PYTHON_USEDEP}]
+ dev-python/smart-open[${PYTHON_USEDEP}]
+ dev-python/stopit[${PYTHON_USEDEP}]
+ dev-python/tabulate[${PYTHON_USEDEP}]
+ dev-python/throttler[${PYTHON_USEDEP}]
dev-python/toposort[${PYTHON_USEDEP}]
dev-python/wrapt[${PYTHON_USEDEP}]
sci-mathematics/pulp[${PYTHON_USEDEP}]
@@ -50,7 +58,8 @@ RDEPEND="
distutils_enable_sphinx docs \
dev-python/sphinxcontrib-napoleon \
dev-python/sphinx-argparse \
- dev-python/sphinx_rtd_theme \
+ dev-python/sphinx-rtd-theme \
dev-python/docutils \
- dev-python/recommonmark
+ dev-python/recommonmark \
+ dev-python/myst-parser
distutils_enable_tests pytest
