commit: 048f49ddebd47dfe85fdffad7ec869913a6ccec7 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Wed Jan 7 22:30:38 2015 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Wed Jan 7 22:30:38 2015 +0000 URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=048f49dd
Initial ebuild --- sci-biology/SEECER/ChangeLog | 10 ++++++++++ sci-biology/SEECER/SEECER-0.1.3.ebuild | 33 +++++++++++++++++++++++++++++++++ sci-biology/SEECER/metadata.xml | 9 +++++++++ 3 files changed, 52 insertions(+) diff --git a/sci-biology/SEECER/ChangeLog b/sci-biology/SEECER/ChangeLog new file mode 100644 index 0000000..1e865a6 --- /dev/null +++ b/sci-biology/SEECER/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-biology/SEECER +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*SEECER-0.1.3 (07 Jan 2015) + + 07 Jan 2015; Martin Mokrejs <[email protected]> + +SEECER-0.1.3.ebuild, +metadata.xml: + initial ebuild + diff --git a/sci-biology/SEECER/SEECER-0.1.3.ebuild b/sci-biology/SEECER/SEECER-0.1.3.ebuild new file mode 100644 index 0000000..7f3833e --- /dev/null +++ b/sci-biology/SEECER/SEECER-0.1.3.ebuild @@ -0,0 +1,33 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +DESCRIPTION="Error corrector for RNA-Seq reads" +HOMEPAGE="http://sb.cs.cmu.edu/seecer/"; +SRC_URI="http://sb.cs.cmu.edu/seecer/downloads/SEECER-0.1.3.tar.gz + http://sb.cs.cmu.edu/seecer/downloads/manual.pdf"; + +LICENSE="" +SLOT="0" +KEYWORDS="" +IUSE="" + +DEPEND="sci-libs/gsl + sci-biology/seqan + sci-biology/jellyfish" +RDEPEND="${DEPEND}" + +S="${S}"/SEECER + +# doh, it install /usr/bin/seecer (note the lowercase letters) + +# checking for x86_64-pc-linux-gnu-gcc option to support OpenMP... -fopenmp +# +# Uses: +# libgomp.so.1 => /usr/lib/gcc/x86_64-pc-linux-gnu/4.8.3/libgomp.so.1 (0x00007f7853faf000) + + +# dobin bin/run_seecer.sh +# dodoc "${DISTDIR}"/manual.pdf diff --git a/sci-biology/SEECER/metadata.xml b/sci-biology/SEECER/metadata.xml new file mode 100644 index 0000000..2bc8930 --- /dev/null +++ b/sci-biology/SEECER/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>[email protected]</email> + <name>Martin Mokrejs</name> + </maintainer> +</pkgmetadata>
