Hi, I was updating world today and the following packages failed: 1. sci-chemistry/jmol-applet-12.0.45-r1 and sci-chemistry/jmol-12.0.45 failed to compile.The errors are almost the same for both the packages.
2. sci-mathematics/sage-doc-4.7.1 failed with a digest failure. The build logs are attached with this email. My emerge --info is given below. Please let me know if you need any further information. Portage 2.2.0_alpha51 (default/linux/amd64/10.0/desktop/kde, gcc-4.4.5, glibc-2.12.2-r0, 2.6.38-gentoo-r6 x86_64) ================================================================= System uname: Linux-2.6.38-gentoo-r6-x86_64-Intel-R-_Core-TM-_i5_CPU_M_460_@ _2.53GHz-with-gentoo-2.0.3 Timestamp of tree: Sat, 20 Aug 2011 11:30:02 +0000 app-shells/bash: 4.1_p9 dev-java/java-config: 2.1.11-r3 dev-lang/python: 2.7.1-r1::sage-on-gentoo, 3.1.3-r1 dev-util/cmake: 2.8.4-r1 dev-util/pkgconfig: 0.26 sys-apps/baselayout: 2.0.3 sys-apps/openrc: 0.8.3-r1 sys-apps/sandbox: 2.4 sys-devel/autoconf: 2.13, 2.68 sys-devel/automake: 1.9.6-r3, 1.10.3, 1.11.1 sys-devel/binutils: 2.20.1-r1 sys-devel/gcc: 4.4.5 sys-devel/gcc-config: 1.4.1-r1 sys-devel/libtool: 2.4-r1 sys-devel/make: 3.82 sys-kernel/linux-headers: 2.6.38 (virtual/os-headers) sys-libs/glibc: 2.12.2 Repositories: gentoo enlightenment sage-on-gentoo myself Installed sets: ACCEPT_KEYWORDS="amd64" ACCEPT_LICENSE="*" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=native -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/xsessions" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-march=native -O2 -pipe" DISTDIR="/usr/portage/distfiles" EMERGE_DEFAULT_OPTS="--with-bdeps=y" FEATURES="assume-digests binpkg-logs distlocks ebuild-locks fixlafiles fixpackages news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch" FFLAGS="" GENTOO_MIRRORS="http://distfiles.gentoo.org"; LANG="en_US.UTF8" LC_ALL="en_US.UTF-8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" LINGUAS="en en_US" MAKEOPTS="-j2" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/var/lib/layman/enlightenment /var/lib/layman/sage-on-gentoo /usr/local/portage" SYNC="rsync://rsync.gentoo.org/gentoo-portage" USE="X a52 aac accessibility acl acpi akonadi alsa amd64 bash-completion berkdb branding bzip2 cairo cdda cddb cdr cli consolekit cracklib crypt cups curl curlwrappers cxx dbus declarative djvu dri dts dvd dvdr encode exif fam fbcon ffmpeg flac fontconfig ftp fuse gdbm gdu gif gnutls gphoto2 gpm gstreamer gtk iconv ieee1394 imagemagick jpeg kipi lame latex lcms ldap libsamplerate lzma mad mmap mmx mmx2 mng modules mp3 mp4 mpeg mudflap multilib musepack ncurses networkmanager nls nptl nptlonly ogg opengl openmp oss pam pango pch pcmcia pcre pdf perl phonon plasma png policykit ppds pppd python qt3support qt4 readline savedconfig sdl session smp speex spell sqlite srt sse sse2 ssl ssse3 svg sysfs system-sqlite taglib tcpd theora threads tiff truetype udev unicode usb v4l v4l2 vdpau vim-syntax vorbis wicd wifi wmf x264 xattr xcf xcomposite xft xinerama xml xorg xosd xpm xulrunner xv xvid xvmc yv12 zeroconf zlib zsh-completion" ALSA_CARDS="hda-intel" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan stage tables krita karbon braindump active" CAMERAS="*" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="evdev keyboard mouse synaptics" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="en en_US" PHP_TARGETS="php5-3" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="nvidia vesa" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CPPFLAGS, CTARGET, INSTALL_MASK, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
* Package: sci-chemistry/jmol-applet-12.0.45-r1 * Repository: sage-on-gentoo * Maintainer: [email protected] * USE: amd64 consolekit elibc_glibc kernel_linux multilib policykit userland_GNU * FEATURES: preserve-libs sandbox >>> [1m[37mcfg-update-1.8.2-r1[0m[0m: Creating checksum index... * Using: sun-jdk-1.6 * Applying jmol-nointl.patch ... [ ok ] * Applying jmol-manifest.patch ... [ ok ] * Applying jmol-applet-Jmol.js-12.0.45-unix.patch ... [ ok ] removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/Jmol.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolApplet.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolApplet0.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolApplet0_Console.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolApplet0_Minimize.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolApplet0_Popup.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolApplet0_ReadersCifPdb.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolApplet0_ReadersMolXyz.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolApplet0_ReadersMore.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolApplet0_ReadersQuantum.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolApplet0_ReadersSimple.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolApplet0_ReadersXml.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolApplet0_ReadersXtal.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolApplet0_ShapeBio.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolApplet0_ShapeSpecial.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolApplet0_ShapeSurface.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolApplet0_Smiles.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolApplet0_Symmetry.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolApplet0_i18n_ar.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolApplet0_i18n_ca.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolApplet0_i18n_cs.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolApplet0_i18n_da.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolApplet0_i18n_de.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolApplet0_i18n_el.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolApplet0_i18n_en_GB.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolApplet0_i18n_es.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolApplet0_i18n_et.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolApplet0_i18n_fi.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolApplet0_i18n_fr.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolApplet0_i18n_hu.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolApplet0_i18n_id.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolApplet0_i18n_it.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolApplet0_i18n_ko.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolApplet0_i18n_nb.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolApplet0_i18n_nl.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolApplet0_i18n_oc.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolApplet0_i18n_pl.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolApplet0_i18n_pt.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolApplet0_i18n_pt_BR.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolApplet0_i18n_ru.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolApplet0_i18n_sl.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolApplet0_i18n_sv.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolApplet0_i18n_ta.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolApplet0_i18n_tr.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolApplet0_i18n_uk.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolApplet0_i18n_zh_CN.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolApplet0_i18n_zh_TW.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolAppletSigned.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolAppletSigned0.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolAppletSigned0_Console.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolAppletSigned0_Minimize.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolAppletSigned0_MultiTouch.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolAppletSigned0_Popup.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolAppletSigned0_ReadersCifPdb.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolAppletSigned0_ReadersMolXyz.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolAppletSigned0_ReadersMore.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolAppletSigned0_ReadersQuantum.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolAppletSigned0_ReadersSimple.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolAppletSigned0_ReadersXml.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolAppletSigned0_ReadersXtal.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolAppletSigned0_ShapeBio.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolAppletSigned0_ShapeSpecial.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolAppletSigned0_ShapeSurface.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolAppletSigned0_Smiles.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolAppletSigned0_Symmetry.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolAppletSigned0_i18n_ar.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolAppletSigned0_i18n_ca.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolAppletSigned0_i18n_cs.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolAppletSigned0_i18n_da.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolAppletSigned0_i18n_de.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolAppletSigned0_i18n_el.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolAppletSigned0_i18n_en_GB.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolAppletSigned0_i18n_es.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolAppletSigned0_i18n_et.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolAppletSigned0_i18n_fi.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolAppletSigned0_i18n_fr.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolAppletSigned0_i18n_hu.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolAppletSigned0_i18n_id.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolAppletSigned0_i18n_it.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolAppletSigned0_i18n_ko.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolAppletSigned0_i18n_nb.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolAppletSigned0_i18n_nl.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolAppletSigned0_i18n_oc.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolAppletSigned0_i18n_pl.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolAppletSigned0_i18n_pt.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolAppletSigned0_i18n_pt_BR.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolAppletSigned0_i18n_ru.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolAppletSigned0_i18n_sl.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolAppletSigned0_i18n_sv.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolAppletSigned0_i18n_ta.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolAppletSigned0_i18n_tr.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolAppletSigned0_i18n_uk.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolAppletSigned0_i18n_zh_CN.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolAppletSigned0_i18n_zh_TW.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/JmolData.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/plugin-jars/dadmlbrowser.jar' removed `/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/plugin-jars/dirbrowser.jar' `netscape.jar' -> `netscape.tempjar' removed `Acme.jar' removed `commons-cli-1.0.jar' removed `gnujaxp-onlysax.jar' removed `gnujaxp.jar' removed `itext-1.4.5.jar' removed `junit.jar' removed `saxon.jar' removed `vecmath1.2-1.14.jar' removed `vecmath1.2-1.14.tar.gz' `netscape.tempjar' -> `netscape.jar' * Disabling all optional ANT_TASKS [echo] XSLT class 'com.icl.saxon.StyleSheet' not found. [echo] Note that the documentation is NOT generated now. [echo] Generating user's guide [java] Java Result: 1 [echo] Generating history of changes [java] Java Result: 1 [echo] Generating developer's guide [java] Java Result: 1 BUILD FAILED /var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45/build.xml:304: jarsigner returned: 1 Total time: 15 seconds * ERROR: sci-chemistry/jmol-applet-12.0.45-r1 failed (compile phase): * eant failed * * Call stack: * ebuild.sh, line 56: Called src_compile * environment, line 4331: Called eant '-Dlibjars.uptodate=true' 'main' * environment, line 898: Called die * The specific snippet of code: * ant ${antflags} "${@}" || die "eant failed" * * If you need support, post the output of 'emerge --info =sci-chemistry/jmol-applet-12.0.45-r1', * the complete build log and the output of 'emerge -pqv =sci-chemistry/jmol-applet-12.0.45-r1'. * This ebuild is from an overlay named 'sage-on-gentoo': '/var/lib/layman/sage-on-gentoo/' !!! When you file a bug report, please include the following information: GENTOO_VM=sun-jdk-1.6 CLASSPATH="" JAVA_HOME="/opt/sun-jdk-1.6.0.26" JAVACFLAGS="-source 1.4 -target 1.4" COMPILER="javac" and of course, the output of emerge --info * The complete build log is located at '/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/temp/environment'. * S: '/var/tmp/portage/sci-chemistry/jmol-applet-12.0.45-r1/work/jmol-12.0.45'
* Package: sci-chemistry/jmol-12.0.45 * Repository: sage-on-gentoo * Maintainer: [email protected] [email protected] * USE: amd64 client-only consolekit elibc_glibc kernel_linux multilib policykit userland_GNU * FEATURES: preserve-libs sandbox >>> [1m[37mcfg-update-1.8.2-r1[0m[0m: Checksum index is up-to-date ... * Using: sun-jdk-1.6 * Applying jmol-nointl.patch ... [ ok ] * Applying jmol-manifest.patch ... [ ok ] removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/Jmol.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolApplet.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolApplet0.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolApplet0_Console.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolApplet0_Minimize.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolApplet0_Popup.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolApplet0_ReadersCifPdb.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolApplet0_ReadersMolXyz.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolApplet0_ReadersMore.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolApplet0_ReadersQuantum.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolApplet0_ReadersSimple.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolApplet0_ReadersXml.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolApplet0_ReadersXtal.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolApplet0_ShapeBio.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolApplet0_ShapeSpecial.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolApplet0_ShapeSurface.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolApplet0_Smiles.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolApplet0_Symmetry.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolApplet0_i18n_ar.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolApplet0_i18n_ca.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolApplet0_i18n_cs.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolApplet0_i18n_da.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolApplet0_i18n_de.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolApplet0_i18n_el.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolApplet0_i18n_en_GB.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolApplet0_i18n_es.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolApplet0_i18n_et.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolApplet0_i18n_fi.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolApplet0_i18n_fr.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolApplet0_i18n_hu.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolApplet0_i18n_id.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolApplet0_i18n_it.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolApplet0_i18n_ko.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolApplet0_i18n_nb.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolApplet0_i18n_nl.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolApplet0_i18n_oc.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolApplet0_i18n_pl.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolApplet0_i18n_pt.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolApplet0_i18n_pt_BR.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolApplet0_i18n_ru.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolApplet0_i18n_sl.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolApplet0_i18n_sv.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolApplet0_i18n_ta.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolApplet0_i18n_tr.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolApplet0_i18n_uk.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolApplet0_i18n_zh_CN.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolApplet0_i18n_zh_TW.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolAppletSigned.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolAppletSigned0.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolAppletSigned0_Console.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolAppletSigned0_Minimize.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolAppletSigned0_MultiTouch.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolAppletSigned0_Popup.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolAppletSigned0_ReadersCifPdb.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolAppletSigned0_ReadersMolXyz.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolAppletSigned0_ReadersMore.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolAppletSigned0_ReadersQuantum.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolAppletSigned0_ReadersSimple.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolAppletSigned0_ReadersXml.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolAppletSigned0_ReadersXtal.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolAppletSigned0_ShapeBio.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolAppletSigned0_ShapeSpecial.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolAppletSigned0_ShapeSurface.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolAppletSigned0_Smiles.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolAppletSigned0_Symmetry.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolAppletSigned0_i18n_ar.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolAppletSigned0_i18n_ca.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolAppletSigned0_i18n_cs.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolAppletSigned0_i18n_da.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolAppletSigned0_i18n_de.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolAppletSigned0_i18n_el.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolAppletSigned0_i18n_en_GB.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolAppletSigned0_i18n_es.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolAppletSigned0_i18n_et.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolAppletSigned0_i18n_fi.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolAppletSigned0_i18n_fr.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolAppletSigned0_i18n_hu.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolAppletSigned0_i18n_id.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolAppletSigned0_i18n_it.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolAppletSigned0_i18n_ko.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolAppletSigned0_i18n_nb.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolAppletSigned0_i18n_nl.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolAppletSigned0_i18n_oc.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolAppletSigned0_i18n_pl.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolAppletSigned0_i18n_pt.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolAppletSigned0_i18n_pt_BR.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolAppletSigned0_i18n_ru.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolAppletSigned0_i18n_sl.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolAppletSigned0_i18n_sv.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolAppletSigned0_i18n_ta.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolAppletSigned0_i18n_tr.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolAppletSigned0_i18n_uk.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolAppletSigned0_i18n_zh_CN.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolAppletSigned0_i18n_zh_TW.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/JmolData.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/plugin-jars/dadmlbrowser.jar' removed `/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/plugin-jars/dirbrowser.jar' `netscape.jar' -> `netscape.tempjar' removed `Acme.jar' removed `commons-cli-1.0.jar' removed `gnujaxp-onlysax.jar' removed `gnujaxp.jar' removed `itext-1.4.5.jar' removed `junit.jar' removed `saxon.jar' removed `vecmath1.2-1.14.jar' removed `vecmath1.2-1.14.tar.gz' `netscape.tempjar' -> `netscape.jar' * Disabling all optional ANT_TASKS [echo] XSLT class 'com.icl.saxon.StyleSheet' not found. [echo] Note that the documentation is NOT generated now. [echo] Generating user's guide [java] Java Result: 1 [echo] Generating history of changes [java] Java Result: 1 [echo] Generating developer's guide [java] Java Result: 1 BUILD FAILED /var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45/build.xml:304: jarsigner returned: 1 Total time: 17 seconds * ERROR: sci-chemistry/jmol-12.0.45 failed (compile phase): * eant failed * * Call stack: * ebuild.sh, line 56: Called src_compile * environment, line 4371: Called eant '-Dlibjars.uptodate=true' 'main' * environment, line 918: Called die * The specific snippet of code: * ant ${antflags} "${@}" || die "eant failed" * * If you need support, post the output of 'emerge --info =sci-chemistry/jmol-12.0.45', * the complete build log and the output of 'emerge -pqv =sci-chemistry/jmol-12.0.45'. * This ebuild is from an overlay named 'sage-on-gentoo': '/var/lib/layman/sage-on-gentoo/' !!! When you file a bug report, please include the following information: GENTOO_VM=sun-jdk-1.6 CLASSPATH="" JAVA_HOME="/opt/sun-jdk-1.6.0.26" JAVACFLAGS="-source 1.4 -target 1.4" COMPILER="javac" and of course, the output of emerge --info * The complete build log is located at '/var/tmp/portage/sci-chemistry/jmol-12.0.45/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/jmol-12.0.45/temp/environment'. * S: '/var/tmp/portage/sci-chemistry/jmol-12.0.45/work/jmol-12.0.45'
--2011-08-20 20:21:53-- http://www.sagemath.org/doc-bz2/sage-4.7.1-doc-html.tar.bz2 Resolving www.sagemath.org... 128.208.160.197 Connecting to www.sagemath.org|128.208.160.197|:80... connected. HTTP request sent, awaiting response... 200 OK Length: 2651527 (2.5M) [application/x-bzip2] Saving to: “/opt/distfiles/sage-doc-html-4.7.1.tar.bz2” 0K .......... .......... .......... .......... .......... 1% 39.0K 65s 50K .......... .......... .......... .......... .......... 3% 149K 40s 100K .......... .......... .......... .......... .......... 5% 186K 31s 150K .......... .......... .......... .......... .......... 7% 196K 26s 200K .......... .......... .......... .......... .......... 9% 289K 22s 250K .......... .......... .......... .......... .......... 11% 320K 19s 300K .......... .......... .......... .......... .......... 13% 473K 16s 350K .......... .......... .......... .......... .......... 15% 228K 15s 400K .......... .......... .......... .......... .......... 17% 310K 14s 450K .......... .......... .......... .......... .......... 19% 385K 13s 500K .......... .......... .......... .......... .......... 21% 164K 13s 550K .......... .......... .......... .......... .......... 23% 414K 12s 600K .......... .......... .......... .......... .......... 25% 487K 11s 650K .......... .......... .......... .......... .......... 27% 499K 10s 700K .......... .......... .......... .......... .......... 28% 503K 9s 750K .......... .......... .......... .......... .......... 30% 491K 9s 800K .......... .......... .......... .......... .......... 32% 487K 8s 850K .......... .......... .......... .......... .......... 34% 392K 8s 900K .......... .......... .......... .......... .......... 36% 177K 8s 950K .......... .......... .......... .......... .......... 38% 465K 7s 1000K .......... .......... .......... .......... .......... 40% 415K 7s 1050K .......... .......... .......... .......... .......... 42% 468K 6s 1100K .......... .......... .......... .......... .......... 44% 504K 6s 1150K .......... .......... .......... .......... .......... 46% 409K 6s 1200K .......... .......... .......... .......... .......... 48% 327K 6s 1250K .......... .......... .......... .......... .......... 50% 203K 5s 1300K .......... .......... .......... .......... .......... 52% 421K 5s 1350K .......... .......... .......... .......... .......... 54% 476K 5s 1400K .......... .......... .......... .......... .......... 55% 470K 4s 1450K .......... .......... .......... .......... .......... 57% 412K 4s 1500K .......... .......... .......... .......... .......... 59% 505K 4s 1550K .......... .......... .......... .......... .......... 61% 456K 4s 1600K .......... .......... .......... .......... .......... 63% 218K 4s 1650K .......... .......... .......... .......... .......... 65% 207K 3s 1700K .......... .......... .......... .......... .......... 67% 319K 3s 1750K .......... .......... .......... .......... .......... 69% 330K 3s 1800K .......... .......... .......... .......... .......... 71% 383K 3s 1850K .......... .......... .......... .......... .......... 73% 400K 3s 1900K .......... .......... .......... .......... .......... 75% 126K 2s 1950K .......... .......... .......... .......... .......... 77% 442K 2s 2000K .......... .......... .......... .......... .......... 79% 369K 2s 2050K .......... .......... .......... .......... .......... 81% 500K 2s 2100K .......... .......... .......... .......... .......... 83% 460K 2s 2150K .......... .......... .......... .......... .......... 84% 444K 1s 2200K .......... .......... .......... .......... .......... 86% 426K 1s 2250K .......... .......... .......... .......... .......... 88% 160K 1s 2300K .......... .......... .......... .......... .......... 90% 426K 1s 2350K .......... .......... .......... .......... .......... 92% 412K 1s 2400K .......... .......... .......... .......... .......... 94% 495K 1s 2450K .......... .......... .......... .......... .......... 96% 449K 0s 2500K .......... .......... .......... .......... .......... 98% 383K 0s 2550K .......... .......... .......... ......... 100% 506K=9.1s 2011-08-20 20:22:02 (283 KB/s) - “/opt/distfiles/sage-doc-html-4.7.1.tar.bz2” saved [2651527/2651527] !!! Fetched file: sage-doc-html-4.7.1.tar.bz2 VERIFY FAILED! !!! Reason: Filesize does not match recorded size !!! Got: 2651527 !!! Expected: 10015277 ('Filesize does not match recorded size', 2651527, 10015277) Refetching... File renamed to '/opt/distfiles/sage-doc-html-4.7.1.tar.bz2._checksum_failure_.CR2nnB' !!! Couldn't download 'sage-doc-html-4.7.1.tar.bz2'. Aborting. * Fetch failed for 'sci-mathematics/sage-doc-4.7.1', Log file: * '/var/tmp/portage/sci-mathematics/sage-doc-4.7.1/temp/build.log'
