On 08/21/2011 03:24 PM, Christopher Schwan wrote:
On Saturday 20 August 2011 21:23:01 P Purkayastha wrote:
Hi,
I was updating world today and the following packages failed:
1. sci-chemistry/jmol-applet-12.0.45-r1 and sci-chemistry/jmol-12.0.45
failed to compile.The errors are almost the same for both the packages.
2. sci-mathematics/sage-doc-4.7.1 failed with a digest failure.
The build logs are attached with this email.
My emerge --info is given below. Please let me know if you need any further
information.
Portage 2.2.0_alpha51 (default/linux/amd64/10.0/desktop/kde, gcc-4.4.5,
glibc-2.12.2-r0, 2.6.38-gentoo-r6 x86_64)
=================================================================
System uname: Linux-2.6.38-gentoo-r6-x86_64-Intel-R-_Core-TM-_i5_CPU_M_460_@
_2.53GHz-with-gentoo-2.0.3
Timestamp of tree: Sat, 20 Aug 2011 11:30:02 +0000
app-shells/bash: 4.1_p9
dev-java/java-config: 2.1.11-r3
dev-lang/python: 2.7.1-r1::sage-on-gentoo, 3.1.3-r1
dev-util/cmake: 2.8.4-r1
dev-util/pkgconfig: 0.26
sys-apps/baselayout: 2.0.3
sys-apps/openrc: 0.8.3-r1
sys-apps/sandbox: 2.4
sys-devel/autoconf: 2.13, 2.68
sys-devel/automake: 1.9.6-r3, 1.10.3, 1.11.1
sys-devel/binutils: 2.20.1-r1
sys-devel/gcc: 4.4.5
sys-devel/gcc-config: 1.4.1-r1
sys-devel/libtool: 2.4-r1
sys-devel/make: 3.82
sys-kernel/linux-headers: 2.6.38 (virtual/os-headers)
sys-libs/glibc: 2.12.2
Repositories: gentoo enlightenment sage-on-gentoo myself
Installed sets:
ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt
/usr/share/xsessions"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/
/etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild
/etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d
/etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-march=native -O2 -pipe"
DISTDIR="/usr/portage/distfiles"
EMERGE_DEFAULT_OPTS="--with-bdeps=y"
FEATURES="assume-digests binpkg-logs distlocks ebuild-locks fixlafiles
fixpackages news parallel-fetch preserve-libs protect-owned sandbox sfperms
strict unknown-features-warn unmerge-logs unmerge-orphans userfetch"
FFLAGS=""
GENTOO_MIRRORS="http://distfiles.gentoo.org";
LANG="en_US.UTF8"
LC_ALL="en_US.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LINGUAS="en en_US"
MAKEOPTS="-j2"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times
--compress --force --whole-file --delete --stats --timeout=180
--exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/var/lib/layman/enlightenment
/var/lib/layman/sage-on-gentoo /usr/local/portage"
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="X a52 aac accessibility acl acpi akonadi alsa amd64 bash-completion
berkdb branding bzip2 cairo cdda cddb cdr cli consolekit cracklib crypt cups
curl curlwrappers cxx dbus declarative djvu dri dts dvd dvdr encode exif
fam fbcon ffmpeg flac fontconfig ftp fuse gdbm gdu gif gnutls gphoto2 gpm
gstreamer gtk iconv ieee1394 imagemagick jpeg kipi lame latex lcms ldap
libsamplerate lzma mad mmap mmx mmx2 mng modules mp3 mp4 mpeg mudflap
multilib musepack ncurses networkmanager nls nptl nptlonly ogg opengl
openmp oss pam pango pch pcmcia pcre pdf perl phonon plasma png policykit
ppds pppd python qt3support qt4 readline savedconfig sdl session smp speex
spell sqlite srt sse sse2 ssl ssse3 svg sysfs system-sqlite taglib tcpd
theora threads tiff truetype udev unicode usb v4l v4l2 vdpau vim-syntax
vorbis wicd wifi wmf x264 xattr xcf xcomposite xft xinerama xml xorg xosd
xpm xulrunner xv xvid xvmc yv12 zeroconf zlib zsh-completion"
ALSA_CARDS="hda-intel" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare
dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter
mmap_emul mulaw multi null plug rate route share shm softvol"
APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm
authn_default authn_file authz_dbm authz_default authz_groupfile authz_host
authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate
dir disk_cache env expires ext_filter file_cache filter headers include
info log_config logio mem_cache mime mime_magic negotiation rewrite
setenvif speling status unique_id userdir usertrack vhost_alias"
CALLIGRA_FEATURES="kexi words flow plan stage tables krita karbon braindump
active" CAMERAS="*" COLLECTD_PLUGINS="df interface irq load memory rrdtool
swap syslog" ELIBC="glibc"
GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt
gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore
rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx"
INPUT_DEVICES="evdev keyboard mouse synaptics" KERNEL="linux"
LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb
ncurses text" LINGUAS="en en_US" PHP_TARGETS="php5-3" RUBY_TARGETS="ruby18"
USERLAND="GNU" VIDEO_CARDS="nvidia vesa" XTABLES_ADDONS="quota2 psd pknock
lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit
sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset: CPPFLAGS, CTARGET, INSTALL_MASK, PORTAGE_BUNZIP2_COMMAND,
PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
Hi,
Francois fixed the problem with sage-doc's Manifest. I wasnt able to produce
the problems with jmol. I first tried icedtea6-bin until I saw you are using
sun-jdk. However, that did not produce the (un)desired result. Do you have any
ideas, Francois?
To circumvent the problems with jmol, compile sage-notebook without java
(USE=-java). You wont be able to plot in 3d though.
Cheers,
Christopher
It seems Francois is unable to post to the ML. So, here's my reply that
I sent to him earlier this day, in order to document my problem in the ML.
Hi Francois,
I didn't have ant-nodeps installed. Perhaps no package pulled it in?
Also, I had changed my jdk from icedtea to sun-jdk a few weeks ago and
it seems ant-core was merged before the switch of jdk's.
All of them have merged successfully now. Thanks for your help.
punarbasu.
