An interesting update to anyone who may be interested: I switched from a
jpeg compression to a lzw compression method when building pyramids with
gdal_retile and now the image stack is read and published by GeoServer
without issue. I'm not sure what the cause of this issue is, but it works.
Best,
Todd
On Fri, May 4, 2018 at 11:29 AM, Todd Jacobus <t...@tcarta.com> wrote:
> Hi all,
>
> I followed the GeoServer pyramid building tutorial
> <http://docs.geoserver.org/stable/en/user/tutorials/imagepyramid/imagepyramid.html>
> using
> gdal_retile which worked beautifully for the sample Blue Marble image
> provided--I was able to create tiles and publish in GeoServer without
> issue. However, I'm now running the exact same workflow (same exact
> gdal_retile parameters while tile images are hosted in the same location on
> the server) for a single tiff image (71.8mb) that is a little larger than
> the tutorial image (33.2mb) and now geoserver encounters an error (see
> complete stack trace below). My ideas:
>
> -Could this be a geospatial issue, involving projection metadata?
> -Could this be an issue with the image having an alpha value? The
> workflow detailed in the JDBC database tutorial
> <http://docs.geoserver.org/stable/en/user/tutorials/imagemosaic-jdbc/imagemosaic-jdbc_tutorial.html>
> suggests
> computing a color table using the rgb2pct tool. Is this something work
> trying?
>
> I'm still new at this, but I'm at a loss for new ideas, while there
> doesn't seem to be much information on the web. Thank you very much for
> your time in working on this with me.
>
> Best,
> Todd
>
>
> Here is the gdal_retile command I executed: gdal_retile -v -r bilinear
> -levels 4 -ps 2048 2048 -co "TILED=YES" -co "COMPRESS=JPEG" -targetDir
> bmpyramid global_500m_dbm_stylized_3.tif
>
> Here's the gdalinfo output for the original geotif:
>
> Driver: GTiff/GeoTIFF
> Files: K:\Marine_Basemap\global_500m_dbm_MapBox_nd.tif
> Size is 77796, 38194
> Coordinate System is:
> GEOGCS["WGS 84",
> DATUM["WGS_1984",
> SPHEROID["WGS 84",6378137,298.257223563,
> AUTHORITY["EPSG","7030"]],
> AUTHORITY["EPSG","6326"]],
> PRIMEM["Greenwich",0],
> UNIT["degree",0.0174532925199433],
> AUTHORITY["EPSG","4326"]]
> Origin = (-180.008333333333326,90.008654440287117)
> Pixel Size = (0.004627700000000,-0.004627700000000)
> Metadata:
> AREA_OR_POINT=Area
> TIFFTAG_DOCUMENTNAME=F:\Leaflet_Mapbox\500m_dbm_
> stylized\grid\edited_areas\global_500m_dbm_stylized_3.tif
> TIFFTAG_RESOLUTIONUNIT=2 (pixels/inch)
> TIFFTAG_XRESOLUTION=72
> TIFFTAG_YRESOLUTION=72
> Image Structure Metadata:
> COMPRESSION=DEFLATE
> INTERLEAVE=PIXEL
> Corner Coordinates:
> Upper Left (-180.0083333, 90.0086544) (180d 0'30.00"W, 90d 0'31.16"N)
> Lower Left (-180.0083333, -86.7417194) (180d 0'30.00"W, 86d44'30.19"S)
> Upper Right ( 180.0082159, 90.0086544) (180d 0'29.58"E, 90d 0'31.16"N)
> Lower Right ( 180.0082159, -86.7417194) (180d 0'29.58"E, 86d44'30.19"S)
> Center ( -0.0000587, 1.6334675) ( 0d 0' 0.21"W, 1d38' 0.48"N)
> Band 1 Block=77796x1 Type=Byte, ColorInterp=Red
> NoData Value=0
> Band 2 Block=77796x1 Type=Byte, ColorInterp=Green
> NoData Value=0
> Band 3 Block=77796x1 Type=Byte, ColorInterp=Blue
> NoData Value=0
> Band 4 Block=77796x1 Type=Byte, ColorInterp=Alpha
> NoData Value=0
>
> Server stack trace:
>
> org.apache.wicket.WicketRuntimeException: Method onRequest of interface
> org.apache.wicket.behavior.IBehaviorListener targeted at
> org.apache.wicket.ajax.markup.html.AjaxLink$1@27008518 on component
> [AjaxLink [Component id = link]] threw an exception at org.apache.wicket.
> RequestListenerInterface.internalInvoke(RequestListenerInterface.java:268)
> at org.apache.wicket.RequestListenerInterface.invoke(
> RequestListenerInterface.java:241) at org.apache.wicket.core.
> request.handler.ListenerInterfaceRequestHandler.invokeListener(
> ListenerInterfaceRequestHandler.java:248) at org.apache.wicket.core.
> request.handler.ListenerInterfaceRequestHandler.respond(
> ListenerInterfaceRequestHandler.java:234) at org.apache.wicket.request.
> cycle.RequestCycle$HandlerExecutor.respond(RequestCycle.java:895) at
> org.apache.wicket.request.RequestHandlerStack.execute(RequestHandlerStack.java:64)
> at org.apache.wicket.request.cycle.RequestCycle.execute(RequestCycle.java:265)
> at org.apache.wicket.request.cycle.RequestCycle.
> processRequest(RequestCycle.java:222) at org.apache.wicket.request.
> cycle.RequestCycle.processRequestAndDetach(RequestCycle.java:293) at
> org.apache.wicket.protocol.http.WicketFilter.processRequestCycle(WicketFilter.java:261)
> at org.apache.wicket.protocol.http.WicketFilter.
> processRequest(WicketFilter.java:203) at org.apache.wicket.protocol.
> http.WicketServlet.doGet(WicketServlet.java:137) at javax.servlet.http.
> HttpServlet.service(HttpServlet.java:622) at javax.servlet.http.
> HttpServlet.service(HttpServlet.java:729) at org.springframework.web.
> servlet.mvc.ServletWrappingController.handleRequestInternal(
> ServletWrappingController.java:157) at org.springframework.web.
> servlet.mvc.AbstractController.handleRequest(AbstractController.java:174)
> at org.springframework.web.servlet.mvc.SimpleControllerHandlerAdapter
> .handle(SimpleControllerHandlerAdapter.java:50) at
> org.springframework.web.servlet.DispatcherServlet.
> doDispatch(DispatcherServlet.java:963) at org.springframework.web.
> servlet.DispatcherServlet.doService(DispatcherServlet.java:897) at
> org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:970)
> at org.springframework.web.servlet.FrameworkServlet.
> doGet(FrameworkServlet.java:861) at javax.servlet.http.
> HttpServlet.service(HttpServlet.java:622) at org.springframework.web.
> servlet.FrameworkServlet.service(FrameworkServlet.java:846) at
> javax.servlet.http.HttpServlet.service(HttpServlet.java:729) at
> org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(
> ApplicationFilterChain.java:291) at org.apache.catalina.core.
> ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) at
> org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52) at
> org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(
> ApplicationFilterChain.java:239) at org.apache.catalina.core.
> ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) at
> org.apache.catalina.filters.CorsFilter.handleNonCORS(CorsFilter.java:436)
> at org.apache.catalina.filters.CorsFilter.doFilter(CorsFilter.java:177)
> at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(
> ApplicationFilterChain.java:239) at org.apache.catalina.core.
> ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) at
> org.geoserver.filters.ThreadLocalsCleanupFilter.doFilter(
> ThreadLocalsCleanupFilter.java:28) at org.apache.catalina.core.
> ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:239)
> at org.apache.catalina.core.ApplicationFilterChain.doFilter(
> ApplicationFilterChain.java:206) at org.geoserver.filters.
> SpringDelegatingFilter$Chain.doFilter(SpringDelegatingFilter.java:75) at
> org.geoserver.monitor.MonitorFilter.doFilter(MonitorFilter.java:85) at
> org.geoserver.filters.SpringDelegatingFilter$Chain.doFilter(
> SpringDelegatingFilter.java:71) at org.springframework.orm.
> hibernate3.support.OpenSessionInViewFilter.doFilterInternal(
> OpenSessionInViewFilter.java:231) at org.springframework.web.
> filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107) at
> org.geoserver.filters.SpringDelegatingFilter$Chain.doFilter(
> SpringDelegatingFilter.java:71) at org.geoserver.wms.animate.
> AnimatorFilter.doFilter(AnimatorFilter.java:71) at org.geoserver.filters.
> SpringDelegatingFilter$Chain.doFilter(SpringDelegatingFilter.java:71) at
> org.geoserver.filters.SpringDelegatingFilter.doFilter(
> SpringDelegatingFilter.java:46) at org.apache.catalina.core.
> ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:239)
> at org.apache.catalina.core.ApplicationFilterChain.doFilter(
> ApplicationFilterChain.java:206) at org.geoserver.platform.
> AdvancedDispatchFilter.doFilter(AdvancedDispatchFilter.java:50) at
> org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(
> ApplicationFilterChain.java:239) at org.apache.catalina.core.
> ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) at
> org.springframework.security.web.FilterChainProxy$
> VirtualFilterChain.doFilter(FilterChainProxy.java:316) at
> org.geoserver.security.filter.GeoServerCompositeFilter$
> NestedFilterChain.doFilter(GeoServerCompositeFilter.java:69) at
> org.springframework.security.web.access.intercept.
> FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:126) at
> org.springframework.security.web.access.intercept.
> FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:90) at
> org.geoserver.security.filter.GeoServerCompositeFilter$
> NestedFilterChain.doFilter(GeoServerCompositeFilter.java:73) at
> org.geoserver.security.filter.GeoServerCompositeFilter.doFilter(
> GeoServerCompositeFilter.java:92) at org.springframework.security.
> web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
> at org.geoserver.security.filter.GeoServerCompositeFilter$
> NestedFilterChain.doFilter(GeoServerCompositeFilter.java:69) at
> org.springframework.security.web.access.ExceptionTranslationFilter.
> doFilter(ExceptionTranslationFilter.java:114) at
> org.geoserver.security.filter.GeoServerCompositeFilter$
> NestedFilterChain.doFilter(GeoServerCompositeFilter.java:73) at
> org.geoserver.security.filter.GeoServerCompositeFilter.doFilter(
> GeoServerCompositeFilter.java:92) at org.springframework.security.
> web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
> at org.geoserver.security.filter.GeoServerAnonymousAuthenticati
> onFilter.doFilter(GeoServerAnonymousAuthenticationFilter.java:54) at
> org.springframework.security.web.FilterChainProxy$
> VirtualFilterChain.doFilter(FilterChainProxy.java:330) at
> org.geoserver.security.filter.GeoServerCompositeFilter$
> NestedFilterChain.doFilter(GeoServerCompositeFilter.java:69) at
> org.springframework.security.web.authentication.
> AbstractAuthenticationProcessingFilter.doFilter(
> AbstractAuthenticationProcessingFilter.java:205) at
> org.geoserver.security.filter.GeoServerCompositeFilter$
> NestedFilterChain.doFilter(GeoServerCompositeFilter.java:73) at
> org.geoserver.security.filter.GeoServerCompositeFilter.doFilter(
> GeoServerCompositeFilter.java:92) at org.geoserver.security.filter.
> GeoServerUserNamePasswordAuthenticationFilter.doFilter(
> GeoServerUserNamePasswordAuthenticationFilter.java:116) at
> org.springframework.security.web.FilterChainProxy$
> VirtualFilterChain.doFilter(FilterChainProxy.java:330) at
> org.geoserver.security.filter.GeoServerCompositeFilter$
> NestedFilterChain.doFilter(GeoServerCompositeFilter.java:69) at
> org.springframework.security.web.context.SecurityContextPersistenceFilt
> er.doFilter(SecurityContextPersistenceFilter.java:91) at
> org.geoserver.security.filter.GeoServerSecurityContextPersis
> tenceFilter$1.doFilter(GeoServerSecurityContextPersistenceFilter.java:53)
> at org.geoserver.security.filter.GeoServerCompositeFilter$
> NestedFilterChain.doFilter(GeoServerCompositeFilter.java:73) at
> org.geoserver.security.filter.GeoServerCompositeFilter.doFilter(
> GeoServerCompositeFilter.java:92) at org.springframework.security.
> web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
> at
> org.springframework.security.web.FilterChainProxy.doFilterInternal(FilterChainProxy.java:213)
> at
> org.springframework.security.web.FilterChainProxy.doFilter(FilterChainProxy.java:176)
> at org.geoserver.security.GeoServerSecurityFilterChainProxy.doFilter(
> GeoServerSecurityFilterChainProxy.java:152) at org.springframework.web.
> filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:346)
> at org.springframework.web.filter.DelegatingFilterProxy.doFilter(
> DelegatingFilterProxy.java:262) at org.apache.catalina.core.
> ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:239)
> at org.apache.catalina.core.ApplicationFilterChain.doFilter(
> ApplicationFilterChain.java:206) at org.geoserver.filters.
> LoggingFilter.doFilter(LoggingFilter.java:88) at org.apache.catalina.core.
> ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:239)
> at org.apache.catalina.core.ApplicationFilterChain.doFilter(
> ApplicationFilterChain.java:206) at org.geoserver.filters.
> XFrameOptionsFilter.doFilter(XFrameOptionsFilter.java:89) at
> org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(
> ApplicationFilterChain.java:239) at org.apache.catalina.core.
> ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) at
> org.geoserver.filters.GZIPFilter.doFilter(GZIPFilter.java:42) at
> org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(
> ApplicationFilterChain.java:239) at org.apache.catalina.core.
> ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) at
> org.geoserver.filters.SessionDebugFilter.doFilter(SessionDebugFilter.java:48)
> at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(
> ApplicationFilterChain.java:239) at org.apache.catalina.core.
> ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) at
> org.geoserver.filters.FlushSafeFilter.doFilter(FlushSafeFilter.java:44)
> at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(
> ApplicationFilterChain.java:239) at org.apache.catalina.core.
> ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) at
> org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(
> CharacterEncodingFilter.java:197) at org.springframework.web.
> filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107) at
> org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(
> ApplicationFilterChain.java:239) at org.apache.catalina.core.
> ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) at
> org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:219)
> at
> org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:106)
> at
> org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:502)
> at
> org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:142)
> at
> org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:79)
> at org.apache.catalina.valves.AbstractAccessLogValve.invoke(
> AbstractAccessLogValve.java:617) at org.apache.catalina.core.
> StandardEngineValve.invoke(StandardEngineValve.java:88) at
> org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:518)
> at org.apache.coyote.http11.AbstractHttp11Processor.process(
> AbstractHttp11Processor.java:1091) at org.apache.coyote.AbstractProtocol$
> AbstractConnectionHandler.process(AbstractProtocol.java:668) at
> org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1521)
> at
> org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.run(NioEndpoint.java:1478)
> at
> java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
> at
> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
> at
> org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
> at java.lang.Thread.run(Thread.java:745) Caused by:
> java.lang.reflect.InvocationTargetException
> at sun.reflect.GeneratedMethodAccessor466.invoke(Unknown Source) at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(
> DelegatingMethodAccessorImpl.java:43) at
> java.lang.reflect.Method.invoke(Method.java:497)
> at org.apache.wicket.RequestListenerInterface.internalInvoke(
> RequestListenerInterface.java:258) ... 117 more Caused by:
> java.lang.RuntimeException: Error occurred while building the resources for
> the configuration page at org.geoserver.web.data.layer.
> NewLayerPage.buildLayerInfo(NewLayerPage.java:411) at
> org.geoserver.web.data.layer.NewLayerPage$9.onClick(NewLayerPage.java:301)
> at org.geoserver.web.wicket.SimpleAjaxLink$1.onClick(SimpleAjaxLink.java:47)
> at org.apache.wicket.ajax.markup.html.AjaxLink$1.onEvent(AjaxLink.java:85)
> at
> org.apache.wicket.ajax.AjaxEventBehavior.respond(AjaxEventBehavior.java:155)
> at org.apache.wicket.ajax.AbstractDefaultAjaxBehavior.onRequest(
> AbstractDefaultAjaxBehavior.java:601) ... 121 more Caused by:
> org.geotools.data.DataSourceException: Unable to create this mosaic at
> org.geotools.gce.imagemosaic.RasterLayerResponse.prepareResponse(RasterLayerResponse.java:738)
> at
> org.geotools.gce.imagemosaic.RasterLayerResponse.processRequest(RasterLayerResponse.java:605)
> at
> org.geotools.gce.imagemosaic.RasterLayerResponse.createResponse(RasterLayerResponse.java:574)
> at org.geotools.gce.imagemosaic.RasterManager.read(RasterManager.java:1249)
> at
> org.geotools.gce.imagemosaic.ImageMosaicReader.read(ImageMosaicReader.java:897)
> at
> org.geotools.gce.imagemosaic.ImageMosaicReader.read(ImageMosaicReader.java:875)
> at
> org.geotools.gce.imagepyramid.ImagePyramidReader.loadRequestedTiles(ImagePyramidReader.java:437)
> at
> org.geotools.gce.imagepyramid.ImagePyramidReader.read(ImagePyramidReader.java:388)
> at org.geoserver.catalog.CoverageDimensionCustomizerReader.read(
> CoverageDimensionCustomizerReader.java:232) at org.geoserver.catalog.
> SingleGridCoverage2DReader.read(SingleGridCoverage2DReader.java:145) at
> org.geoserver.catalog.CatalogBuilder.getCoverageSampleDimensions(CatalogBuilder.java:1180)
> at
> org.geoserver.catalog.CatalogBuilder.buildCoverageInternal(CatalogBuilder.java:1070)
> at
> org.geoserver.catalog.CatalogBuilder.buildCoverage(CatalogBuilder.java:1001)
> at org.geoserver.catalog.CatalogBuilder.buildCoverage(CatalogBuilder.java:961)
> at
> org.geoserver.web.data.layer.NewLayerPage.buildLayerInfo(NewLayerPage.java:398)
> ... 126 more Caused by: java.io.IOException:
> java.util.concurrent.ExecutionException:
> org.geotools.gce.imagemosaic.GranuleLoadingException: Failed to load
> granule file:/home/tcartada/appservers/apache-tomcat-8x/
> webapps/geoserver/data/image_pyramids/global_marine_
> basemap_500m/0/global_500m_dbm_MapBox_nd_01_01.tif at
> org.geotools.gce.imagemosaic.granulecollector.BaseSubmosaicProducer.
> collectGranules(BaseSubmosaicProducer.java:213) at
> org.geotools.gce.imagemosaic.granulecollector.BaseSubmosaicProducer.
> createMosaic(BaseSubmosaicProducer.java:361) at
> org.geotools.gce.imagemosaic.RasterLayerResponse$MosaicProducer.produce(RasterLayerResponse.java:432)
> at org.geotools.gce.imagemosaic.RasterLayerResponse$
> MosaicProducer.access$500(RasterLayerResponse.java:288) at
> org.geotools.gce.imagemosaic.RasterLayerResponse.prepareResponse(RasterLayerResponse.java:672)
> ... 140 more Caused by: java.util.concurrent.ExecutionException:
> org.geotools.gce.imagemosaic.GranuleLoadingException: Failed to load
> granule file:/home/tcartada/appservers/apache-tomcat-8x/
> webapps/geoserver/data/image_pyramids/global_marine_
> basemap_500m/0/global_500m_dbm_MapBox_nd_01_01.tif at
> java.util.concurrent.FutureTask.report(FutureTask.java:122) at
> java.util.concurrent.FutureTask.get(FutureTask.java:192) at
> org.geotools.gce.imagemosaic.granulecollector.BaseSubmosaicProducer.
> collectGranules(BaseSubmosaicProducer.java:123) ... 144 more Caused by:
> org.geotools.gce.imagemosaic.GranuleLoadingException: Failed to load
> granule file:/home/tcartada/appservers/apache-tomcat-8x/
> webapps/geoserver/data/image_pyramids/global_marine_
> basemap_500m/0/global_500m_dbm_MapBox_nd_01_01.tif at
> org.geotools.gce.imagemosaic.GranuleLoader.call(GranuleLoader.java:110)
> at org.geotools.gce.imagemosaic.GranuleLoader.call(GranuleLoader.java:41)
> at java.util.concurrent.FutureTask.run(FutureTask.java:266) at
> org.geotools.gce.imagemosaic.granulecollector.BaseSubmosaicProducer.
> acceptGranule(BaseSubmosaicProducer.java:396) at
> org.geotools.gce.imagemosaic.granulecollector.DefaultSubmosaicProducer.
> accept(DefaultSubmosaicProducer.java:72) at org.geotools.gce.imagemosaic.
> RasterLayerResponse$MosaicProducer.visit(RasterLayerResponse.java:375) at
> org.geotools.gce.imagemosaic.catalog.CachingDataStoreGranuleCatalog
> .getGranuleDescriptors(CachingDataStoreGranuleCatalog.java:191) at
> org.geotools.gce.imagemosaic.RasterManager.getGranuleDescriptors(RasterManager.java:1259)
> at
> org.geotools.gce.imagemosaic.RasterLayerResponse.prepareResponse(RasterLayerResponse.java:669)
> ... 140 more Caused by: java.lang.NullPointerException at
> org.geotools.gce.imagemosaic.GranuleDescriptor.loadRaster(GranuleDescriptor.java:1031)
> at org.geotools.gce.imagemosaic.GranuleLoader.call(GranuleLoader.java:107)
> ... 148 more
>
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