You are right Micheal. Ok I try to explain,
this is my code(temporary and incpmplete for this function):

public CreateNewLayer(String a)
{
        Filter filter;
        try {
                filter = CQL.toFilter(a);
                SimpleFeatureCollection myFeatureCollection = null;
                try {
                                ListFeatureCollection subset = new
ListFeatureCollection(myFeatureCollection.subCollection(filter));
                        } catch (IOException e) {
                                e.printStackTrace();
                        }
                } catch (CQLException e) {
                        e.printStackTrace();
                }

        }

I don't know hot to put my filter in a featuresource and in a new layer

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