One approach might be to keep one set of branches that have your IDE
files, and one set of branches that don't.  Something like:

1. remote tracking branch from the authoritative repository
2. your working branch, without IDE files
3. your working branch(es), with IDE files

You work in #3.  Changes can be moved from #2 to #3 can be done with
ordinary merging.  Changes can be moved from #3 to #2 using something
like "git filter-tree" (presumably controlled by a version-controlled
file that tells what to leave out).


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