Some more info:
Looking deeper into the first reported duplicate:
$ git ls-tree df79068051fa8702eae7e91635cca7eee1339002
100644 blob 14d6d1a6a2f4a7db4e410583c2893d24cb587766 build.gradle
120000 blob cd70e37500a35663957cf60f011f81703be5d032 msrc
040000 tree 658c892e15fbe0d3ea6b8490d9d54c5f2e658fc9 msrc
100644 blob f623819c94a08252298220871ac0ba1118372e59 pom.xml
100644 blob 9223cc2fddb138f691312c1ea2656b9dc17612d2 settings.gradle
040000 tree c3bac1d92722bdee9588a27747b164baa275201f src
$ git ls-tree -rt df79068051fa8702eae7e91635cca7eee1339002
100644 blob 14d6d1a6a2f4a7db4e410583c2893d24cb587766 build.gradle
120000 blob cd70e37500a35663957cf60f011f81703be5d032 msrc
040000 tree 658c892e15fbe0d3ea6b8490d9d54c5f2e658fc9 msrc
100644 blob 127cacc68e20f70eec653b7e0312e8c2cf4ebfed
msrc/UsageAggregator.java
100644 blob 568f190bcac57f65770a9dd1b9d34f34dfb9d4d3
msrc/UsageDataThriftAdapter.java
100644 blob c227bfb2565843a35a69a29550f4a03a708c8100
msrc/UsageMetricsManagerInterface.java
100644 blob 483e5780067eadd6fd28a9f7b58a1737b5947c86
msrc/UsageProcessingException.java
100644 blob c6d745bb34205388997fff15f6e3eb3b9fea125d
msrc/UsageServiceNodeImpl.java
100644 blob 968318d1fbf3496872cc0159aa46361425bb3be5
msrc/UsageTimeoutException.java
100644 blob d55c315a35dd8403079d142fac7794a99e1beed6
msrc/MetricsBucket.java
100644 blob c6312ab4a69d79989ab7ae6fe1be692e9b438f0e
msrc/MetricsProcessingTask.java
100644 blob 6d06fdb305934f7bdee7a04cf40c356efb3c9da7
msrc/MetricsProcessor.java
100644 blob f623819c94a08252298220871ac0ba1118372e59 pom.xml
100644 blob 9223cc2fddb138f691312c1ea2656b9dc17612d2 settings.gradle
040000 tree c3bac1d92722bdee9588a27747b164baa275201f src
040000 tree 4712c420d352e3913949d9ec6981b9212bb448f4 src/main
040000 tree 052e3a6fe1faf217cd40d3fabdaf5e776932d333 src/main/assembly
100644 blob 835cfba90f42a5a4bb8a05691a9298f277377c11
src/main/assembly/dist.xml
040000 tree 8846f85545cb27ebed266319b75a320056287c04 src/main/java
040000 tree db3dd8926905e265e8fe3abdb1e62e05e9ace3a3 src/main/java/com
040000 tree 8987b8de2fed0f35837ea142ce09917a620b43ea
src/main/java/com/foo
040000 tree 26bb60d4b8a0a7eaf9fa9efc2d9d423cda64825e
src/main/java/com/foo/bar
040000 tree 2f14d50a02fdc1c1d1fd6345b98b0095c11d69d1
src/main/java/com/foo/bar/baz
040000 tree 4afe69fe69c58ba67fff8c2111e56ddd311108be
src/main/java/com/foo/bar/baz/common
100644 blob 568f190bcac57f65770a9dd1b9d34f34dfb9d4d3
src/main/java/com/foo/bar/baz/common/UsageDataThriftAdapter.java
100644 blob 245bd5587d3a2fb3e6f2fab4e8c7c802f3ca8566
src/main/java/com/foo/bar/baz/common/UsageMetricsManager.java
100644 blob 483e5780067eadd6fd28a9f7b58a1737b5947c86
src/main/java/com/foo/bar/baz/common/UsageProcessingException.java
100644 blob c6d745bb34205388997fff15f6e3eb3b9fea125d
src/main/java/com/foo/bar/baz/common/UsageServiceNodeImpl.java
100644 blob 968318d1fbf3496872cc0159aa46361425bb3be5
src/main/java/com/foo/bar/baz/common/UsageTimeoutException.java
100644 blob d55c315a35dd8403079d142fac7794a99e1beed6
src/main/java/com/foo/bar/baz/common/MetricsBucket.java
100644 blob 0e9a34f9a0d7ba77830c1834357e638ee2a44d9f
src/main/java/com/foo/bar/baz/common/MetricsProcessor.java
100644 blob c90418e60b1f40768777528f948a8bc30a35fac6
src/main/java/com/foo/bar/baz/common/MetricsProcessorImpl.java
040000 tree 8b2a8c73558f546ac9069af7a168dfd163eeeac2 src/main/resources
040000 tree ad81b59752d35721382ba6bcc4a45d7e5cfb40fa
src/main/resources/META-INF
040000 tree 007f88c2be66c53dd399bd973ff62b7689fa8764
src/main/resources/META-INF/services
100644 blob c9bc0bb27a9ced13acb4f0b793716fb8de22288a
src/main/resources/META-INF/services/com.foo.bar.service.ServiceDefinition
The second tree reports similar results though not idential - some blobs
are different. However, both report a 'msrc' entry being both blob and a
tree object.
Is that the problem that fsck reporting?
If so, what might be the correct repair?
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