I would be grateful for any thoughts about the follow problem.

Git status reports untracked files:

    $ git status
    # On branch master
    # Untracked files:
    #   (use "git add <file>..." to include in what will be committed)
    nothing added to commit but untracked files present (use "git add" to track)

But we have files at this directory at index:

    $ git ls-tree -r HEAD |grep land_9/processed/root.pim
    100644 blob 9eeca5c75dc2c945600b6e0d253a8cb8191b7e80

I have checked this error appear after the first commit, that added this file.

I have tried:

1. Clone repo.
2. Clean/Checkout file (as described at this [1] article) - after
checkout status is untracked.
3. Copy full directory resource.enlighten/ to another repo and add
commit - no errors.
4. Run git fsck - no errors.

Git version for Windows

Git config:

        repositoryformatversion = 0
        filemode = false
        bare = false
        logallrefupdates = true
        symlinks = false
        ignorecase = true
        hideDotFiles = dotGitOnly
        compression = 1

Thank you in advance.

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