I tried to use git gui in an empty dir (via Git Cheetah).
I selected to clone from a file:///Y:/subdir/foo.git
The result differed from the usual "git clone URL", as the newly
created "master" branch was not set to track origin/master.
"git pull" failed.
When I start by "git clone", I can immediately proceed with "git
The difference can be checked in .git/config, in section
Have a nice day,
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