kou commented on issue #141:
URL:
https://github.com/apache/arrow-nanoarrow/issues/141#issuecomment-1451232330
Passed. Is this expected? Or should I install `"arrow"` package manually?
```text
========================
Build and test R package
========================
└ Install nanoarrow test dependencies
R version 4.2.2 Patched (2022-11-10 r83330) -- "Innocent and Trusting"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> for (pkg in c("blob", "hms", "tibble", "rlang", "testthat", "tibble",
"vctrs", "withr")) if (!requireNamespace(pkg, quietly = TRUE))
install.packages(pkg, repos = "https://cloud.r-project.org/";)
>
>
└ Build the R package source tarball
* installing *source* package 'nanoarrow' ...
** using staged installation
cmake version 3.25.1
CMake suite maintained and supported by Kitware (kitware.com/cmake).
[0] 'cmake' --version
-- Building using CMake version: 3.25.1
-- The C compiler identification is GNU 12.2.0
-- The CXX compiler identification is GNU 12.2.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Configuring done
-- Generating done
-- Build files have been written to: /tmp/RtmpIp5kap/filec44dc24dc148c/build
[0] 'cmake' /tmp/nanoarrow-0.1.0.fvxJK0/apache-arrow-nanoarrow-0.1.0
-DNANOARROW_BUNDLE=ON -DNANOARROW_NAMESPACE=RPkg
[0] 'cmake' --build '/tmp/RtmpIp5kap/filec44dc24dc148c/build'
-- Install configuration: ""
-- Installing: /tmp/RtmpIp5kap/filec44dc24dc148c/dist/./nanoarrow.h
-- Installing: /tmp/RtmpIp5kap/filec44dc24dc148c/dist/./nanoarrow.c
-- Installing: /tmp/RtmpIp5kap/filec44dc24dc148c/dist/./nanoarrow.hpp
[0] 'cmake' --install '/tmp/RtmpIp5kap/filec44dc24dc148c/build'
--prefix='/tmp/RtmpIp5kap/filec44dc24dc148c/dist'
[1] TRUE
Vendoring files from arrow-nanoarrow to src/:
- /tmp/RtmpIp5kap/filec44dc24dc148c/dist/nanoarrow.c
- /tmp/RtmpIp5kap/filec44dc24dc148c/dist/nanoarrow.h
All files successfully copied to src/
Found vendored nanoarrow
** libs
gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2
-ffile-prefix-map=/build/r-base-wZDgjM/r-base-4.2.2.20221110=.
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -c altrep.c -o altrep.o
gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2
-ffile-prefix-map=/build/r-base-wZDgjM/r-base-4.2.2.20221110=.
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -c array.c -o array.o
gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2
-ffile-prefix-map=/build/r-base-wZDgjM/r-base-4.2.2.20221110=.
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -c array_stream.c -o array_stream.o
gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2
-ffile-prefix-map=/build/r-base-wZDgjM/r-base-4.2.2.20221110=.
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -c array_view.c -o array_view.o
gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2
-ffile-prefix-map=/build/r-base-wZDgjM/r-base-4.2.2.20221110=.
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -c as_array.c -o as_array.o
gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2
-ffile-prefix-map=/build/r-base-wZDgjM/r-base-4.2.2.20221110=.
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -c buffer.c -o buffer.o
gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2
-ffile-prefix-map=/build/r-base-wZDgjM/r-base-4.2.2.20221110=.
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -c convert.c -o convert.o
gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2
-ffile-prefix-map=/build/r-base-wZDgjM/r-base-4.2.2.20221110=.
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -c convert_array.c -o convert_array.o
gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2
-ffile-prefix-map=/build/r-base-wZDgjM/r-base-4.2.2.20221110=.
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -c convert_array_stream.c -o convert_array_stream.o
gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2
-ffile-prefix-map=/build/r-base-wZDgjM/r-base-4.2.2.20221110=.
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -c infer_ptype.c -o infer_ptype.o
gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2
-ffile-prefix-map=/build/r-base-wZDgjM/r-base-4.2.2.20221110=.
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -c init.c -o init.o
gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2
-ffile-prefix-map=/build/r-base-wZDgjM/r-base-4.2.2.20221110=.
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -c materialize.c -o materialize.o
gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2
-ffile-prefix-map=/build/r-base-wZDgjM/r-base-4.2.2.20221110=.
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -c nanoarrow.c -o nanoarrow.o
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2
-ffile-prefix-map=/build/r-base-wZDgjM/r-base-4.2.2.20221110=.
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -c nanoarrow_cpp.cc -o nanoarrow_cpp.o
gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2
-ffile-prefix-map=/build/r-base-wZDgjM/r-base-4.2.2.20221110=.
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -c pointers.c -o pointers.o
gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2
-ffile-prefix-map=/build/r-base-wZDgjM/r-base-4.2.2.20221110=.
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -c schema.c -o schema.o
gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2
-ffile-prefix-map=/build/r-base-wZDgjM/r-base-4.2.2.20221110=.
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -c util.c -o util.o
gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2
-ffile-prefix-map=/build/r-base-wZDgjM/r-base-4.2.2.20221110=.
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -c version.c -o version.o
g++ -std=gnu++14 -shared -L/usr/lib/R/lib -Wl,-z,relro -o nanoarrow.so
altrep.o array.o array_stream.o array_view.o as_array.o buffer.o convert.o
convert_array.o convert_array_stream.o infer_ptype.o init.o materialize.o
nanoarrow.o nanoarrow_cpp.o pointers.o schema.o util.o version.o
-L/usr/lib/R/lib -lR
installing to
/tmp/nanoarrow-0.1.0.fvxJK0/tmplib/00LOCK-r/00new/nanoarrow/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (nanoarrow)
/tmp/nanoarrow-0.1.0.fvxJK0
/tmp/nanoarrow-0.1.0.fvxJK0/apache-arrow-nanoarrow-0.1.0
~/work/c/arrow-nanoarrow
* checking for file
'/tmp/nanoarrow-0.1.0.fvxJK0/apache-arrow-nanoarrow-0.1.0/r/DESCRIPTION' ... OK
* preparing 'nanoarrow':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
* building 'nanoarrow_0.1.0.tar.gz'
└ Run R CMD check
* using log directory '/tmp/nanoarrow-0.1.0.fvxJK0/nanoarrow.Rcheck'
* using R version 4.2.2 Patched (2022-11-10 r83330)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: ASCII
* using option '--no-manual'
* checking for file 'nanoarrow/DESCRIPTION' ... OK
* this is package 'nanoarrow' version '0.1.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package suggested but not available for checking: 'arrow'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'nanoarrow' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... WARNING
Warning in Sys.setlocale("LC_CTYPE", "en_US.UTF-8") :
OS reports request to set locale to "en_US.UTF-8" cannot be honored
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ...
OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: 'arrow'
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* DONE
Status: 1 WARNING, 2 NOTEs
See
'/tmp/nanoarrow-0.1.0.fvxJK0/nanoarrow.Rcheck/00check.log'
for details.
```
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