Hi Scott, I have attached the work data as well as the data in GFF format. The data i have attached is for ##Recombination data from Shifman et al. (2006) ## track. I have also attached an image of what the aggregator looks like.
I tried using the same .conf file on gbrowse v 1.64 and the aggregator works without any overlaps with the scales. Thanks, Meher http://www.nabble.com/file/p15740649/19_1_20000000.gff2 19_1_20000000.gff2 http://www.nabble.com/file/p15740649/mouse.conf mouse.conf http://www.nabble.com/file/p15740649/aggregatorv1.68.png aggregatorv1.68.png Scott Cain-3 wrote: > > Hi Meher, > > It is almost certainly a problem with your conf file and/or your data. > Could you please send a copy of your conf file and a sample of the data > to the list? > > Scott > > On Thu, 2008-02-28 at 06:35 -0800, Meher wrote: >> Hi everyone, >> Has anyone faced this problem before? >> Could this be a problem with my .conf file? >> I would appreciate any inputs on this. >> Thanks, >> Meher >> >> >> Meher wrote: >> > >> > Hi all, >> > >> > I have an aggregator that works fine with v 1.64 but not in v 1.68! >> > >> > I have a xyplot and it looks good everywhere except the region where >> the >> > data begins. >> > >> > In the starting region, the scale overlaps the actual plot! >> > >> > PFA the same area and same data as viewed with gbrowse v 1.68 and v >> 1.64. >> > (Here aggregator1.png is from v 1.68 and aggregator2.png as seen on v >> > 1.64). >> > >> > The database and cofig files are the same, only the versions are >> > different. >> > >> > >> > >> > Please help me resolve this issue. >> > >> > Thanks, >> > >> > Meher >> > >> > >> > >> > >> > >> ------------------------------------------------------------------------- >> > This SF.net email is sponsored by: Microsoft >> > Defy all challenges. Microsoft(R) Visual Studio 2008. >> > http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ >> > _______________________________________________ >> > Gmod-gbrowse mailing list >> > [email protected] >> > https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse >> > >> > >> > -- > ------------------------------------------------------------------------ > Scott Cain, Ph. D. [EMAIL PROTECTED] > GMOD Coordinator (http://www.gmod.org/) 216-392-3087 > Cold Spring Harbor Laboratory > > > ------------------------------------------------------------------------- > This SF.net email is sponsored by: Microsoft > Defy all challenges. Microsoft(R) Visual Studio 2008. > http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ > _______________________________________________ > Gmod-gbrowse mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse > > -- View this message in context: http://www.nabble.com/FW%3A-aggregator-xyplot-overlap-in-gbrowse-1.68-tp15704313p15740649.html Sent from the gmod-gbrowse mailing list archive at Nabble.com. ------------------------------------------------------------------------- This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft(R) Visual Studio 2008. http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ _______________________________________________ Gmod-gbrowse mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
