Hi Meher, Nothing jumps out at me when looking at it briefly. Is BioPerl up to date (either bioperl-live or 1.5.2_100)?
Scott On Thu, 2008-02-28 at 08:45 -0800, Meher wrote: > Hi Scott, > > I have attached the work data as well as the data in GFF format. The data i > have attached is for ##Recombination data from Shifman et al. (2006) ## > track. > I have also attached an image of what the aggregator looks like. > > I tried using the same .conf file on gbrowse v 1.64 and the aggregator works > without any overlaps with the scales. > > Thanks, > Meher > > > http://www.nabble.com/file/p15740649/19_1_20000000.gff2 19_1_20000000.gff2 > http://www.nabble.com/file/p15740649/mouse.conf mouse.conf > http://www.nabble.com/file/p15740649/aggregatorv1.68.png aggregatorv1.68.png > > > Scott Cain-3 wrote: > > > > Hi Meher, > > > > It is almost certainly a problem with your conf file and/or your data. > > Could you please send a copy of your conf file and a sample of the data > > to the list? > > > > Scott > > > > On Thu, 2008-02-28 at 06:35 -0800, Meher wrote: > >> Hi everyone, > >> Has anyone faced this problem before? > >> Could this be a problem with my .conf file? > >> I would appreciate any inputs on this. > >> Thanks, > >> Meher > >> > >> > >> Meher wrote: > >> > > >> > Hi all, > >> > > >> > I have an aggregator that works fine with v 1.64 but not in v 1.68! > >> > > >> > I have a xyplot and it looks good everywhere except the region where > >> the > >> > data begins. > >> > > >> > In the starting region, the scale overlaps the actual plot! > >> > > >> > PFA the same area and same data as viewed with gbrowse v 1.68 and v > >> 1.64. > >> > (Here aggregator1.png is from v 1.68 and aggregator2.png as seen on v > >> > 1.64). > >> > > >> > The database and cofig files are the same, only the versions are > >> > different. > >> > > >> > > >> > > >> > Please help me resolve this issue. > >> > > >> > Thanks, > >> > > >> > Meher > >> > > >> > > >> > > >> > > >> > > >> ------------------------------------------------------------------------- > >> > This SF.net email is sponsored by: Microsoft > >> > Defy all challenges. Microsoft(R) Visual Studio 2008. > >> > http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ > >> > _______________________________________________ > >> > Gmod-gbrowse mailing list > >> > [email protected] > >> > https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse > >> > > >> > > >> > > -- > > ------------------------------------------------------------------------ > > Scott Cain, Ph. D. [EMAIL PROTECTED] > > GMOD Coordinator (http://www.gmod.org/) 216-392-3087 > > Cold Spring Harbor Laboratory > > > > > > ------------------------------------------------------------------------- > > This SF.net email is sponsored by: Microsoft > > Defy all challenges. Microsoft(R) Visual Studio 2008. > > http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ > > _______________________________________________ > > Gmod-gbrowse mailing list > > [email protected] > > https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse > > > > > -- ------------------------------------------------------------------------ Scott Cain, Ph. D. [EMAIL PROTECTED] GMOD Coordinator (http://www.gmod.org/) 216-392-3087 Cold Spring Harbor Laboratory ------------------------------------------------------------------------- This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft(R) Visual Studio 2008. http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ _______________________________________________ Gmod-gbrowse mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
