Using: - gmsh 2.11.0 (both 32 and 64 bit attempted) - getdp 2.7.0 (both 32 and 64 bit attempted) - Windows 7 64-bit, 4GB RAM - The attached .pro file (source: https://github.com/Steve-OH/lap_water)
When I do the following (this is a fresh install, first time running this software): 1. Start gmsh. 2. Load the .pro file. 3. Select cutX, Y, and Z in GetDP -> Post-Processing 4. Press Run, select path to getdp, accept. Gmsh runs for about 2-3 seconds then silently exits (verified gmsh.exe terminated immediately with task manager). The last message printed to the terminal (I set message verbosity to "100" arbitrarily) is: ANN: ERROR------->Requesting more near neighbors than data points<-------------ERROR Partial debug log is attached and also pasted below. How should I proceed? I have also posted this at https://github.com/Steve-OH/lap_water/issues/1 in case it is an issue with the author's .pro file rather than gmsh. Thanks, Jason === LOG === Debug : openglWindow::draw() Debug : Mesh has changed: reinitializing vertex arrays Debug : openglWindow::draw() Info : ------------------------------------------------------- Info : Gmsh version : 2.11.0 Info : Build OS : Windows Info : Build options : Ann Bamg Bfgs Blas Blossom Chaco DIntegration Fltk Gmm Jpeg(Fltk) Kbipack Lapack MathEx Med Mesh Metis Mmg3d Mpeg NativeFileChooser Netgen NoSocklenT ONELAB ONELABMetamodel OpenCascade OpenGL OptHom PETSc Parser Plugins Png(Fltk) Post SLEPc Salome Solver Tetgen(1.5) Voro3D Zlib(Fltk) Info : Build date : 20151107 Info : Build host : christop-e38ece Info : Packager : Administrator Info : Executable : C:\Programs\woodemc\gmsh-2.11.0-Windows\gmsh.exe Info : Home directory : C:\Users\Jason\AppData\Roaming/ Info : Launch date : Tue Feb 02 13:51:13 2016 Info : Command line : gmsh Info : ------------------------------------------------------- Debug : Deleting onelabGroup widgets (108) Debug : Deleting onelabGroup widgets (108) ... Debug : Mesh has changed: reinitializing vertex arrays Info : Calling '"C:\Programs\woodemc\getdp-2.7.0-Windows\getdp.exe" "C:\Programs\woodemc\lap_water-master\models\oa k_hole.pro" -onelab "GetDP" 127.0.0.1:57610' Info : Running 'GetDP'... Info : GetDP - Performing ONELAB 'check' Info : GetDP - Running 'C:\Programs\woodemc\getdp-2.7.0-Windows\getdp.exe C:\Programs\woodemc\lap_water-master\models \oak_hole.pro -onelab GetDP 127.0.0.1:57610' [GetDP 2.7.0, 1 node] Info : GetDP - Started (Tue Feb 02 13:53:12 2016, Wall = 0.031s, CPU = 0.0468003s, Mem = 8.73047Mb) Info : GetDP - Got mesh name from Onelab: 'C:\Programs\woodemc\lap_water-master\models\oak_hole.msh' Info : GetDP - Initializing Gmsh Info : GetDP - Loading problem definition 'C:\Programs\woodemc\lap_water-master\models\oak_hole.pro' Info : GetDP - Loading problem definition 'C:\Programs\woodemc\lap_water-master\models\diffusion.pro' Info : GetDP - Available Resolutions Info : GetDP - (1) LinearAdaptive Info : GetDP - Available PostOperations Info : GetDP - (1) cutX Info : GetDP - (2) cutY Info : GetDP - (3) cutZ Info : GetDP - Stopped (Tue Feb 02 13:53:12 2016, Wall = 0.156s, CPU = 0.0468003s, Mem = 9.94922Mb) Info : Done running 'GetDP' Info : Done Info : Reading 'C:\Programs\woodemc\lap_water-master\models\oak_hole.geo'... Debug : Surface: 301 Debug : SVD : 243.853,45.7905,0 (min=2) Debug : Plane : (0 x + 0 y + 1 z = 0) Debug : Normal : (0 , 0 , 1 ) Debug : t1 : (0 , 1 , 0 ) Debug : t2 : (1 , 0 , 0 ) Debug : pt : (0 , 0 , 0 ) Debug : Surface: 302 Debug : SVD : 243.853,45.7905,0 (min=2) Debug : Plane : (0 x + 0 y + 1 z = 15.24) Debug : Normal : (0 , 0 , 1 ) Debug : t1 : (0 , 1 , 0 ) Debug : t2 : (1 , 0 , 0 ) Debug : pt : (0 , 0 , 15.24 ) Debug : Surface: 303 Debug : SVD : 243.84,15.24,0 (min=2) Debug : Plane : (1 x + 0 y + 0 z = 0) Debug : Normal : (1 , 0 , 0 ) Debug : t1 : (0 , 0 , 1 ) Debug : t2 : (0 , 1 , 0 ) Debug : pt : (0 , 0 , 0 ) Debug : Surface: 304 Debug : SVD : 45.72,15.24,0 (min=2) Debug : Plane : (-0 x + -1 y + -0 z = -243.84) Debug : Normal : (-0 , -1 , -0 ) Debug : t1 : (0 , 0 , 1 ) Debug : t2 : (1 , 0 , 0 ) Debug : pt : (0 , 243.84 , 0 ) Debug : Surface: 305 Debug : SVD : 243.84,15.24,-0 (min=2) Debug : Plane : (1 x + 0 y + 0 z = 45.72) Debug : Normal : (1 , 0 , 0 ) Debug : t1 : (0 , 0 , 1 ) Debug : t2 : (0 , 1 , 0 ) Debug : pt : (45.72 , 0 , 0 ) Debug : Surface: 306 Debug : SVD : 45.72,15.24,0 (min=2) Debug : Plane : (-0 x + -1 y + -0 z = -0) Debug : Normal : (-0 , -1 , -0 ) Debug : t1 : (0 , 0 , 1 ) Debug : t2 : (1 , 0 , 0 ) Debug : pt : (0 , 0 , 0 ) Debug : Surface: 307 Debug : SVD : 15.24,2.54,0 (min=2) Debug : Plane : (1 x + 0 y + 0 z = 21.59) Debug : Normal : (1 , 0 , 0 ) Debug : t1 : (0 , 0 , 1 ) Debug : t2 : (0 , 1 , 0 ) Debug : pt : (21.59 , 0 , 0 ) Debug : Surface: 308 Debug : SVD : 15.24,2.54,0 (min=2) Debug : Plane : (-0 x + -1 y + -0 z = -123.19) Debug : Normal : (-0 , -1 , -0 ) Debug : t1 : (0 , 0 , 1 ) Debug : t2 : (1 , 0 , 0 ) Debug : pt : (0 , 123.19 , 0 ) Debug : Surface: 309 Debug : SVD : 15.24,2.54,-0 (min=2) Debug : Plane : (1 x + 0 y + 0 z = 24.13) Debug : Normal : (1 , 0 , 0 ) Debug : t1 : (0 , 0 , 1 ) Debug : t2 : (0 , 1 , 0 ) Debug : pt : (24.13 , 0 , 0 ) Debug : Surface: 310 Debug : SVD : 15.24,2.54,0 (min=2) Debug : Plane : (-0 x + -1 y + -0 z = -120.65) Debug : Normal : (-0 , -1 , -0 ) Debug : t1 : (0 , 0 , 1 ) Debug : t2 : (1 , 0 , 0 ) Debug : pt : (0 , 120.65 , 0 ) Debug : Gmsh model (GModel) imported: Debug : 24 Vertices Debug : 28 Edges Debug : 10 Faces Debug : 1 Regions Info : Done reading 'C:\Programs\woodemc\lap_water-master\models\oak_hole.geo' Info : Meshing 1D... Info : Meshing curve 101 (Line) ANN: ERROR------->Requesting more near neighbors than data points<-------------ERROR
Debug : openglWindow::draw() Debug : Mesh has changed: reinitializing vertex arrays Debug : openglWindow::draw() Info : ------------------------------------------------------- Info : Gmsh version : 2.11.0 Info : Build OS : Windows Info : Build options : Ann Bamg Bfgs Blas Blossom Chaco DIntegration Fltk Gmm Jpeg(Fltk) Kbipack Lapack MathEx Med Mesh Metis Mmg3d Mpeg NativeFileChooser Netgen NoSocklenT ONELAB ONELABMetamodel OpenCascade OpenGL OptHom PETSc Parser Plugins Png(Fltk) Post SLEPc Salome Solver Tetgen(1.5) Voro3D Zlib(Fltk) Info : Build date : 20151107 Info : Build host : christop-e38ece Info : Packager : Administrator Info : Executable : C:\Programs\woodemc\gmsh-2.11.0-Windows\gmsh.exe Info : Home directory : C:\Users\Jason\AppData\Roaming/ Info : Launch date : Tue Feb 02 13:51:13 2016 Info : Command line : gmsh Info : ------------------------------------------------------- Debug : Deleting onelabGroup widgets (108) Debug : Deleting onelabGroup widgets (108) ... Debug : Mesh has changed: reinitializing vertex arrays Info : Calling '"C:\Programs\woodemc\getdp-2.7.0-Windows\getdp.exe" "C:\Programs\woodemc\lap_water-master\models\oa k_hole.pro" -onelab "GetDP" 127.0.0.1:57610' Info : Running 'GetDP'... Info : GetDP - Performing ONELAB 'check' Info : GetDP - Running 'C:\Programs\woodemc\getdp-2.7.0-Windows\getdp.exe C:\Programs\woodemc\lap_water-master\models \oak_hole.pro -onelab GetDP 127.0.0.1:57610' [GetDP 2.7.0, 1 node] Info : GetDP - Started (Tue Feb 02 13:53:12 2016, Wall = 0.031s, CPU = 0.0468003s, Mem = 8.73047Mb) Info : GetDP - Got mesh name from Onelab: 'C:\Programs\woodemc\lap_water-master\models\oak_hole.msh' Info : GetDP - Initializing Gmsh Info : GetDP - Loading problem definition 'C:\Programs\woodemc\lap_water-master\models\oak_hole.pro' Info : GetDP - Loading problem definition 'C:\Programs\woodemc\lap_water-master\models\diffusion.pro' Info : GetDP - Available Resolutions Info : GetDP - (1) LinearAdaptive Info : GetDP - Available PostOperations Info : GetDP - (1) cutX Info : GetDP - (2) cutY Info : GetDP - (3) cutZ Info : GetDP - Stopped (Tue Feb 02 13:53:12 2016, Wall = 0.156s, CPU = 0.0468003s, Mem = 9.94922Mb) Info : Done running 'GetDP' Info : Done Info : Reading 'C:\Programs\woodemc\lap_water-master\models\oak_hole.geo'... Debug : Surface: 301 Debug : SVD : 243.853,45.7905,0 (min=2) Debug : Plane : (0 x + 0 y + 1 z = 0) Debug : Normal : (0 , 0 , 1 ) Debug : t1 : (0 , 1 , 0 ) Debug : t2 : (1 , 0 , 0 ) Debug : pt : (0 , 0 , 0 ) Debug : Surface: 302 Debug : SVD : 243.853,45.7905,0 (min=2) Debug : Plane : (0 x + 0 y + 1 z = 15.24) Debug : Normal : (0 , 0 , 1 ) Debug : t1 : (0 , 1 , 0 ) Debug : t2 : (1 , 0 , 0 ) Debug : pt : (0 , 0 , 15.24 ) Debug : Surface: 303 Debug : SVD : 243.84,15.24,0 (min=2) Debug : Plane : (1 x + 0 y + 0 z = 0) Debug : Normal : (1 , 0 , 0 ) Debug : t1 : (0 , 0 , 1 ) Debug : t2 : (0 , 1 , 0 ) Debug : pt : (0 , 0 , 0 ) Debug : Surface: 304 Debug : SVD : 45.72,15.24,0 (min=2) Debug : Plane : (-0 x + -1 y + -0 z = -243.84) Debug : Normal : (-0 , -1 , -0 ) Debug : t1 : (0 , 0 , 1 ) Debug : t2 : (1 , 0 , 0 ) Debug : pt : (0 , 243.84 , 0 ) Debug : Surface: 305 Debug : SVD : 243.84,15.24,-0 (min=2) Debug : Plane : (1 x + 0 y + 0 z = 45.72) Debug : Normal : (1 , 0 , 0 ) Debug : t1 : (0 , 0 , 1 ) Debug : t2 : (0 , 1 , 0 ) Debug : pt : (45.72 , 0 , 0 ) Debug : Surface: 306 Debug : SVD : 45.72,15.24,0 (min=2) Debug : Plane : (-0 x + -1 y + -0 z = -0) Debug : Normal : (-0 , -1 , -0 ) Debug : t1 : (0 , 0 , 1 ) Debug : t2 : (1 , 0 , 0 ) Debug : pt : (0 , 0 , 0 ) Debug : Surface: 307 Debug : SVD : 15.24,2.54,0 (min=2) Debug : Plane : (1 x + 0 y + 0 z = 21.59) Debug : Normal : (1 , 0 , 0 ) Debug : t1 : (0 , 0 , 1 ) Debug : t2 : (0 , 1 , 0 ) Debug : pt : (21.59 , 0 , 0 ) Debug : Surface: 308 Debug : SVD : 15.24,2.54,0 (min=2) Debug : Plane : (-0 x + -1 y + -0 z = -123.19) Debug : Normal : (-0 , -1 , -0 ) Debug : t1 : (0 , 0 , 1 ) Debug : t2 : (1 , 0 , 0 ) Debug : pt : (0 , 123.19 , 0 ) Debug : Surface: 309 Debug : SVD : 15.24,2.54,-0 (min=2) Debug : Plane : (1 x + 0 y + 0 z = 24.13) Debug : Normal : (1 , 0 , 0 ) Debug : t1 : (0 , 0 , 1 ) Debug : t2 : (0 , 1 , 0 ) Debug : pt : (24.13 , 0 , 0 ) Debug : Surface: 310 Debug : SVD : 15.24,2.54,0 (min=2) Debug : Plane : (-0 x + -1 y + -0 z = -120.65) Debug : Normal : (-0 , -1 , -0 ) Debug : t1 : (0 , 0 , 1 ) Debug : t2 : (1 , 0 , 0 ) Debug : pt : (0 , 120.65 , 0 ) Debug : Gmsh model (GModel) imported: Debug : 24 Vertices Debug : 28 Edges Debug : 10 Faces Debug : 1 Regions Info : Done reading 'C:\Programs\woodemc\lap_water-master\models\oak_hole.geo' Info : Meshing 1D... Info : Meshing curve 101 (Line) ANN: ERROR------->Requesting more near neighbors than data points<-------------ERROR
oak_hole.pro
Description: Binary data
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