I have shown hydrogen bond formation between guanidino
side chain of
Arginine and carboxylate in sidechain of Aspartate out
my simulation
result using g_hbond. Now I see those two residues are
well exposed in
solvent. Since g_hbond compute hydrogen bonds based on
only distance and
angles, how I can prove that hydrogen bonds formed
between those groups
are by overcoming the dielectric medium of waters?
What do you mean exactly by "overcoming the dielectric
medium of water" ?
XAvier
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