You have #2 in the 3rd column which nmeans that you are not excluding
1-2, 1-3, or 1-4 Nonbonded interactions as you are intended to. Change
this value to a one instead of a two. That should fix your problem.
However, I would recommend that you set up the regular RB bonds like
this. That way you have the settings in case you want to stop
constraining bond lengths.
Remove your [ constraints ] section and adding this:
[ bonds ]
1 2 1 0.15300E+00 0.33470E+06
2 3 1 0.15300E+00 0.33470E+06
3 4 1 0.15300E+00 0.33470E+06
4 5 1 0.15300E+00 0.33470E+06
5 6 1 0.15300E+00 0.33470E+06
6 7 1 0.15300E+00 0.33470E+06
7 8 1 0.15300E+00 0.33470E+06
8 9 1 0.15300E+00 0.33470E+06
9 10 1 0.15300E+00 0.33470E+06
10 11 1 0.15300E+00 0.33470E+06
11 12 1 0.15300E+00 0.33470E+06
12 13 1 0.15300E+00 0.33470E+06
13 14 1 0.15300E+00 0.33470E+06
14 15 1 0.15300E+00 0.33470E+06
15 16 1 0.15300E+00 0.33470E+06
Chris.
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