Dear Gromacs users,
I simulated 6 peptides in a cubical box. I want to calculate radius of gyration for all the peptides together (in order to get a rough idea whether they are coming together or not). But I am not sure whether g_gyrate takes into account Periodic boundary conditions while calculating radius of gyration for such a system. Regards, Gurpreet Singh ------------------------------------------------- University of Dortmund Department of Chemistry Physical Chemistry I - Biophysical Chemistry Otto-Hahn Str. 6 D-44227 Dortmund Germany Office: C1-06 room 176 Phone: +49 231 755 3916 Fax: +49 231 755 3901 -------------------------------------------------
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