Hi all, I have problem with using genion program. It halted when I am trying to replace solvent molecules with ions. I have gromacs-3.3.1 which is a package in debian etch. So I removed it and re-compiled with gcc-4.1.2 . It did not solve the problem. When I compiled gromacs-3.2.1 with gcc-4.1.2, then it worked (on a dell i386 dual core machine). I am also aware of a sucessful compilation of gromacs-3.3.1 with gcc-4.0.2. When I used genion program in gromacs-3.3.1 version on a AMD 64x2 machine running debian etch, it ran just fine.
Does anyone know what is going on with gromacs-3.3.1 and gcc-4.1.2 on a i386 machine? Tuan
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